Paraburkholderia rhynchosiae str. WSM 3937

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Paraburkholderia

Description

Paraburkholderia rhynchosiae strain WSM 3937 is a Gram-negative, rod-shaped bacterium that thrives optimally at a temperature of 29.0°C. This strain is part of the diverse Paraburkholderia genus, which encompasses a variety of environmental and clinical isolates. The rod shape of P. rhynchosiae suggests adaptations that may facilitate its motility and colonization in various substrates, although specific motility details are not provided. As a member of the Burkholderia family, Paraburkholderia species are known for their metabolic versatility, which may include the ability to degrade a wide range of organic compounds. This metabolic adaptability is often linked to their ecological roles within soil and plant-associated environments. While the specific ecological niches of P. rhynchosiae strain WSM 3937 have not been detailed, its traits suggest potential interactions with plant hosts or contributions to nutrient cycling in its habitat. Future research could shed light on the specific environmental conditions under which P. rhynchosiae thrives, as well as its potential applications in bioremediation or agriculture. Understanding the metabolic pathways utilized by this strain could provide insights into its ecological significance and possible interactions with other microorganisms in its environment, contributing to our broader understanding of microbial community dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusParaburkholderia
SpeciesParaburkholderia rhynchosiae
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paraburkholderia rhynchosiae str. WSM 3937


Gene Summary

Adenine Count

1534969 bp

Thymine Count

1539535 bp

Guanine Count

2476608 bp

Cytosine Count

2478787 bp

Genome Length

8029899 bp

Protein-coding Genes

6974 genes

Non-Coding Genes

79 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Gp20C0Z16_27940Not Available-6081941 - 608266926772.2
hypothetical proteinC0Z16_27945Not Available+6082668 - 60828837700.32
transcriptional regulatorC0Z16_27950Not Available+6083170 - 608353213364.3
hypothetical proteinC0Z16_27955Not Available+6083529 - 608380110285.2
hypothetical proteinC0Z16_27960Not Available+6083798 - 60840559376.18
Gp50 proteinC0Z16_27965Not Available+6084052 - 608480428103.0
hypothetical proteinC0Z16_27970Not Available+6084801 - 60849897101.5
Hnh endonucleaseC0Z16_27975Not Available+6084989 - 608526710334.6
Replication protein oC0Z16_27980Not Available+6085770 - 608607211674.9
Helicase gp45C0Z16_27985Not Available+6086069 - 608746050638.9

Displaying genes 1 – 10 of 7053 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

103 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da

Displaying 1–10 of 103 metabolites