Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola plebeius |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Animal intestinal microflora |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola plebeius DSM 17135
Accession NumberABQC00000000.2
Gene Summary
Adenine Count
1232116 bp
Thymine Count
1229996 bp
Guanine Count
991003 bp
Cytosine Count
968209 bp
Genome Length
4421324 bp
Protein-coding Genes
3919 genes
Non-Coding Genes
104 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| rnd transporter, hae1/hme family, permease protein | BACPLE_03311 | Not Available | + | 3640702 - 3643743 | 112794.0 |
| outer membrane efflux protein | BACPLE_03312 | Not Available | + | 3643829 - 3645106 | 47596.2 |
| histidine kinase | BACPLE_03313 | Not Available | + | 3645143 - 3646204 | 40759.1 |
| lyttr dna-binding domain protein | BACPLE_03314 | Not Available | + | 3646191 - 3646973 | 30196.5 |
| mate efflux family protein | BACPLE_03315 | Not Available | + | 3647246 - 3648616 | 49861.4 |
| oxidoreductase, short chain dehydrogenase/reductase family protein | BACPLE_03316 | Not Available | - | 3648606 - 3649349 | 28106.6 |
| hypothetical protein | BACPLE_03317 | Not Available | - | 3649349 - 3653596 | 161959.0 |
| hypothetical protein | BACPLE_03318 | Not Available | - | 3653621 - 3654433 | 30041.2 |
| copper-exporting atpase | BACPLE_03319 | Not Available | - | 3654510 - 3657050 | 92281.7 |
| trka c-terminal domain protein | BACPLE_03320 | Not Available | + | 3657189 - 3659465 | 83988.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
