Dyadobacter fermentans DSM 18053

Gram-negativeRodNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Dyadobacter

Description

Dyadobacter fermentans DSM 18053 is a Gram-negative, rod-shaped bacterium that thrives optimally in mesophilic temperature ranges. Classified as a heterotroph, it primarily derives its energy from organic compounds. This microbe is particularly notable for its role in a variety of environments, including soil, freshwater, and as a component of the microbiota in the gastrointestinal tracts of several organisms. As a facultative anaerobe, D. fermentans can grow in both the presence and absence of oxygen, which allows it to adapt to diverse ecological niches. The Gram-negative nature of D. fermentans is characterized by its thin peptidoglycan layer and outer membrane, which contains lipopolysaccharides, contributing to its virulence and interaction with host organisms. Its rod shape aids in mobility and colonization capabilities. The mesophilic temperature preference indicates its ability to grow within moderate temperature ranges, making it suitable for various habitats, mainly those with organic matter decomposition. As a heterotroph, D. fermentans utilizes organic substrates, playing a vital role in carbon cycling and nutrient recycling within ecosystems. This metabolic versatility allows it to thrive in numerous environments. The facultative anaerobic nature means that it can switch between aerobic respiration when oxygen is available and fermentation or anaerobic respiration when it is not, enhancing its survival in diverse conditions. Dyadobacter fermentans has garnered attention for its potential biotechnological applications, particularly in wastewater treatment and bioremediation processes. Its ability to degrade complex organic compounds suggests a valuable role in environmental management and sustainability efforts. Furthermore, studies on D. fermentans can provide insights into microbial interactions within ecosystems and their implications for nutrient cycling and ecological balance.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusDyadobacter
SpeciesDyadobacter fermentans
StrainDSM 18053

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Dyadobacter fermentans DSM 18053
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Pairs
SporulationNonsporulating
Energy sourceChemoorganoheterotroph
PathogenicityNo

Genome Summary

Dyadobacter fermentans DSM 18053

Accession NumberNC_013037.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5761 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Single-strand binding proteinDFER_RS27420Not Available+6622438 - 662286615557.2
hypothetical proteinDFER_RS27425Not Available+6622878 - 66230787728.16
Dna polymerase iii beta subunitDFER_RS27430Not Available+6623111 - 662425942053.2
Dna adenine methyltransferaseDFER_RS27435Not Available+6624479 - 662533932794.1
Asch domain-containing/pua-like superfamily proteinDFER_RS27445Not Available+6625541 - 662596616278.3
Hypothetical proteinDFER_RS29380Not Available-6626188 - 662690426805.5
myg1 family proteinDFER_RS27455Not Available+6626983 - 662782531751.3
Putative hnh endonucleaseDFER_RS30980Not Available+6628461 - 662876911897.5
hypothetical proteinDFER_RS27470Not Available+6629152 - 662956214788.2
Terminase small subunitDFER_RS27480Not Available+6629810 - 663039421444.1

Displaying genes 1 – 10 of 5824 in total

Pathways

6 pathways

Metabolites

332 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da

Displaying 1–10 of 332 metabolites