Ignicoccus hospitalis KIN4/I

Gram-negativeCocciNon-motileAnaerobe

Kingdom

Thermoproteati

Phylum

Thermoproteota

Class

Thermoprotei

Order

Desulfurococcales

Family

Desulfurococcaceae

Genus

Ignicoccus

Description

An anaerobic chemolithoautotrophic and hyperthermophilic archaeon, Ignicoccus hospitalis was isolated from a submarine hydrothermal system off the coast of Iceland. Optimal growth occurs at 90 degrees C utilizing molecular hydrogen, elemental sulfur, and carbon dioxide as the energy substrate, the electron acceptor, and the carbon source, respectively. It is the obligatory host of Nanoarchaeum equitans; up to a dozen N.equitans can be found on the surface of I.hospitalis without doing any apparent harm to the host. Ignicoccus species are unique among the Archaea in having two cell membranes; together with the cytoplasmic membrane, it encloses a huge periplasmic space, in which membrane-bound vesicles are found. I.hospitalis at 1.3 Mb has one of the smallest genomes among free-living bacteria and archaea, and shows signs of gene exchange with N.equitans as well as gene acquisition from Euryarchaeota and bacteria (adapted from PMID 19000309). (HAMAP: IGNH4)

Taxonomy

KingdomThermoproteati
PhylumThermoproteota
ClassThermoprotei
OrderDesulfurococcales
FamilyDesulfurococcaceae
GenusIgnicoccus
SpeciesIgnicoccus hospitalis
StrainKin4/I

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Ignicoccus hospitalis KIN4/I
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeHyperthermophilic
HabitatAquatic
Biotic relationshipSymbiotic
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNonsporulating
Energy sourceChemolithoautotroph
PathogenicityNo

Genome Summary

Ignicoccus hospitalis KIN4/I

Accession NumberNC_009776.1

Gene Summary

Adenine Count

281521 bp

Thymine Count

282644 bp

Guanine Count

366636 bp

Cytosine Count

366737 bp

Genome Length

1297538 bp

Protein-coding Genes

1478 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
pyridoxal-phosphate-dependent aminotransferase family proteinIGNI_RS04865Not Available-839492 - 84062241454.2
s-adenosyl-l-methionine hydroxide adenosyltransferase family proteinIGNI_RS04870Not Available+840689 - 84144126992.7
nicotinamide-nucleotide adenylyltransferaseIGNI_RS04875Not Available+841438 - 84195319521.0
metal-sulfur cluster assembly factorIGNI_RS04880Not Available-841950 - 84236315665.0
dna import protein ceda1IGNI_RS04885Not Available+842470 - 84275710410.0
5s ribosomal rnaNot AvailableNot Available+842848 - 842961Not Available
hypothetical proteinIGNI_RS04895Not Available-843028 - 84421844824.8
hypothetical proteinIGNI_RS07785Not Available+844273 - 84483019905.7
ob-fold nucleic acid binding domain-containing proteinIGNI_RS07790Not Available+844869 - 84527314908.5
winged helix-turn-helix domain-containing proteinIGNI_RS07660Not Available-845197 - 84549311074.7

Displaying genes 991 – 1000 of 1528 in total

Pathways

23 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling pathway thumbnail
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Show All 23 Pathways

Metabolites

115 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003334aldehydo-D-ribose 5-phosphateC5H11O8PChemical structure of aldehydo-D-ribose 5-phosphateNot available
Average230.1098Da
Monoisotopic230.0191538Da
BASm0003346(2R)-2-phosphoglycerateC3H4O7PChemical structure of (2R)-2-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da

Displaying 1–10 of 115 metabolites