Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111

Non-motileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Streptosporangiales

Family

Nocardiopsidaceae

Genus

Nocardiopsis

Description

This soil bacterium has been known by a number of other names since its isolation (among them Nocardiopsis antarctica and Streptomyces flavidofuscus). Cells grow aerobically as hyphae and form elongated, smooth irregularly sized spores. N.dassonvillei has been isolated from a wide variety of habitats, including soil, glaciers, mildewed fodder, salterns and patients with conjunctivitis or cholangitis. This strain is the type strain, isolated in 1904, but it is not clear what its geographical and ecological origins are. It is an occasional human pathogen, causing actinomycetoma, which are bacteria-filled abcesses (adapted from http://standardsingenomics.org/index.php/sigen/article/view/sigs.1373474). (EBI Integr8)

Taxonomy

Kingdom	Bacillati
Phylum	Actinomycetota
Class	Actinomycetes
Order	Streptosporangiales
Family	Nocardiopsidaceae
Genus	Nocardiopsis
Species	Nocardiopsis dassonvillei
Strain	DSM 43111

Profile

Physiology
Gram staining properties	Not Available
Shape	Not Available
Mobility	No
Flagellar presence	Yes
Number of membranes	1

Ecology, Host, and Life Cycle
Oxygen requirements	Aerobic
Optimal temperature	Not Available
Temperature range	Mesophilic
Habitat	Multiple
Biotic relationship	Free living
Host(s)	Homo sapiens
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Not Available
Pathogenicity	Yes

Genome Summary

Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111

NC_014211.1 NC_014210.1

Gene Summary

Adenine Count

108268 bp

Thymine Count

108911 bp

Guanine Count

277443 bp

Cytosine Count

280732 bp

Genome Length

775354 bp

Protein-coding Genes

699 genes

Non-Coding Genes

16 genes

# of Chromosomes/Plasmids

2

Genes

Name	Locus Tag	UniProt	Strand	Coordinates	Molecular Weight
had family hydrolase	NDAS_RS24045	Not Available	-	101 - 811	25112.9
isopentenyl-diphosphate delta-isomerase	NDAS_RS24050	Not Available	-	1036 - 1593	20453.0
sdr family nad(p)-dependent oxidoreductase	NDAS_RS24055	Not Available	+	1876 - 3363	53836.1
response regulator transcription factor	NDAS_RS24060	Not Available	-	3615 - 4313	24303.3
sensor histidine kinase	NDAS_RS24065	Not Available	-	4319 - 5575	43248.2
duf418 domain-containing protein	NDAS_RS24070	Not Available	+	5727 - 7097	47470.5
ubiquitin-like small modifier protein 1	NDAS_RS24075	Not Available	-	7342 - 7626	9917.79
sialidase family protein	NDAS_RS24080	Not Available	-	7628 - 8731	39069.2
tetr/acrr family transcriptional regulator	NDAS_RS24085	Not Available	+	9178 - 9783	21962.4
nuclear transport factor 2 family protein	NDAS_RS24090	Not Available	-	9954 - 10346	13908.0

Displaying genes 1 – 10 of 5606 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
BASm0001865	diphosphateHO7P2		Not available	Average174.95Da Monoisotopic174.9213971Da
BASm0002458	1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranosideC14H25NO11		Not available	Average383.35Da Monoisotopic383.142760629Da
BASm0003777	1D-myo-inositol 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranosideC15H29N2O11S		Not available	Average445.46Da Monoisotopic445.1486574Da
BASm0003780	1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside 3-phosphateC14H24NO14P		Not available	Average461.314Da Monoisotopic461.094538615Da
BASm0014032	Acetic acidC2H4O2		`64-19-7`	Average60.052Da Monoisotopic60.021129372Da
BASm0016750	X-14847C12H23NO10		`NULL`	Average341.313Da Monoisotopic341.132195945Da
BASm0017265	Uridine diphosphate-N-acetylglucosamineC17H27N3O17P2		`528-04-1`	Average607.3537Da Monoisotopic607.081569477Da

Displaying 1–7 of 7 metabolites