Elusimicrobium minutum Pei191

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Elusimicrobiota

Class

Elusimicrobia

Order

Elusimicrobiales

Family

Elusimicrobiaceae

Genus

Elusimicrobium

Description

Elusimicrobium minutum (strain Pei191) is a mesophilic, obligately anaerobic free-living ultramicrobacterium with a Gram-negative cell envelope isolated from the intestinal cluster from the hindgut of a humivorous scarab beetle larva. Cells are typically rod shaped, but cultures are pleomorphic in all growth phases. E.minutum grows heterotrophically on sugars and ferments D-galactose, D-glucose, D-fructose, D-glucosamine, and N-acetyl-D-glucosamine to acetate, ethanol, carbon dioxide, hydrogen, and alanine as major products but only if amino acids are present in the medium. The production of alanine from glucose is unusual. Alanine is not formed from other amino acids present in the medium but is, rather, derived from the carbon skeleton of glucose. E. minutum does not grow on amino acids, either by fermentation of single amino acids or by fermentation of amino acid pairs (Stickland reactions). Instead, it ferments amino acids only during growth on glucose, presumably by transamination with pyruvate and subsequent oxidative decarboxylation of the resulting 2-oxoacid. This leads the formation of the corresponding oxidative decarboxylation product from most proteinogenic amino acids and the net formation of alanine concomitant to the disappearance of the respective amino acid from the medium. On basal medium with glucose, the cells grow within a pH range of 6.2 to 8.2, and a temperature range of 20 to 32 degrees Celsius but not at 15 or 37 degrees Celsius. Highest growth rates are obtained at 30 degrees and pH 7.5. Growth is best in freshwater medium, but E. minutum also grows at 3.5% salt concentration. PCR-based screening and comparative 16S rRNA gene sequence analysis revealed that strain Pei191 belongs to the intestinal cluster (cluster III) of the Elusimicrobia phylum, a lineage of hitherto uncultivated bacteria present in arthropod and mammalian gut systems. It is only distantly related to the so-called endomicrobia lineage, which comprises mainly uncultivated endosymbionts of termite gut flagellates. (Adaptated from PMID: 19270133, 19270135). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumElusimicrobiota
ClassElusimicrobia
OrderElusimicrobiales
FamilyElusimicrobiaceae
GenusElusimicrobium
SpeciesElusimicrobium minutum
StrainPei191

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Elusimicrobium minutum Pei191
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipSymbiotic
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Elusimicrobium minutum Pei191


Gene Summary

Adenine Count

496056 bp

Thymine Count

490868 bp

Guanine Count

330535 bp

Cytosine Count

326103 bp

Genome Length

1643562 bp

Protein-coding Genes

1525 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Portal proteinEMIN_RS04910Not Available-1054349 - 105653282693.7
Putative large terminaseEMIN_RS04915Not Available-1056533 - 105794254447.7
hypothetical proteinEMIN_RS04920Not Available-1057908 - 105836317076.6
Dna methylaseEMIN_RS04925P76068-1058326 - 105951644618.4
hypothetical proteinEMIN_RS04930Not Available-1059491 - 105980212304.2
hypothetical proteinEMIN_RS09490Not Available-1059982 - 10601165045.26
lar family restriction alleviation proteinEMIN_RS04935Not Available-1060116 - 106049314145.0
Hypothetical proteinEMIN_RS04940Not Available-1060537 - 106124427639.6
hypothetical proteinEMIN_RS04945Not Available-1061222 - 10614558889.69
hypothetical proteinEMIN_RS04950Not Available-1061752 - 10619407214.84

Displaying genes 1 – 10 of 1587 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1646 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001358lactateC3H5O3Chemical structure of lactateNot available
Average89.071Da
Monoisotopic89.0244176Da

Displaying 1–10 of 1646 metabolites