Methylorubrum extorquens CM4

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Methylobacteriaceae

Genus

Methylorubrum

Description

Methylorubrum extorquens CM4 is a Gram-negative, rod-shaped bacterium that primarily exists in terrestrial habitats and functions as a methylotroph, utilizing methanol and other one-carbon compounds as its energy source. This microbe is typically found in single cells or pairs, reflecting its cellular arrangement. It thrives optimally at a temperature of 30.0°C, indicating a preference for moderate environmental conditions. As an aerobic organism, Methylorubrum extorquens CM4 requires oxygen for its metabolic processes, which is characteristic of many methylotrophic bacteria that oxidize methanol and other methyl compounds to generate energy. The ability to metabolize these compounds not only allows this microbe to occupy specific ecological niches but also highlights its potential role in carbon cycling within its habitat. The trait of being a methylotroph suggests that Methylorubrum extorquens CM4 may contribute to the degradation of methanol and other methylated substrates in its environment, which can have implications for biogeochemical processes. This metabolic capability may also situate it as a beneficial organism in biotechnological applications aimed at waste treatment or bioremediation, particularly in contexts where methylated compounds are present. Overall, its specialized metabolism underscores the importance of Methylorubrum extorquens CM4 in terrestrial ecosystems, particularly in the context of carbon transformation and energy flow.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyMethylobacteriaceae
GenusMethylorubrum
SpeciesMethylorubrum extorquens
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Methylorubrum extorquens CM4
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles - Pairs
SporulationNot Available
Energy sourceMethylotroph
PathogenicityNot Available

Genome Summary

Methylorubrum extorquens CM4

Accession NumberNC_011760.1

Gene Summary

Adenine Count

3942 bp

Thymine Count

4229 bp

Guanine Count

7135 bp

Cytosine Count

7311 bp

Genome Length

22617 bp

Protein-coding Genes

34 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
parb/repb/spo0j family partition proteinMCHL_RS27070Not Available+183007 - 18528681335.7
duf4326 domain-containing proteinMCHL_RS27075Not Available+185471 - 18578511857.3
mucr family transcriptional regulatorMCHL_RS31870Not Available-185797 - 18677136239.5
strawberry notch family proteinMCHL_RS27090Not Available+187004 - 191380156119.0
toprim domain-containing proteinMCHL_RS27095Not Available+191406 - 19246437923.4
duf2493 domain-containing proteinMCHL_RS27100Not Available+192799 - 19372834608.9
hypothetical proteinMCHL_RS27105Not Available-193725 - 19407212740.8
hypothetical proteinMCHL_RS31065Not Available+195014 - 1951875998.26
conjugal transfer protein tragMCHL_RS27110Not Available-195391 - 19741573124.1
conjugal transfer protein tradMCHL_RS27115Not Available-197412 - 1976097337.94

Displaying genes 201 – 210 of 5804 in total

Pathways

23 pathways

Metabolites

88 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0012554N-acetyl-beta-D-glucosaminyl-(1->4)-1,6-anhydro-N-acetyl-beta-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioate-D-alanineC37H57N7O20Not availableNot available
Average919.893Da
Monoisotopic919.366934423Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014219Palmitoleic acidC16H30O2Chemical structure of Palmitoleic acidNULL
Average254.4082Da
Monoisotopic254.224580204Da
BASm0014222DiethanolamineC4H11NO2Chemical structure of DiethanolamineNULL
Average105.1356Da
Monoisotopic105.078978601Da

Displaying 1–10 of 88 metabolites