Halorubrum lacusprofundi ATCC 49239

RodMotileAerobe

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halorubrum

Description

Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) is a psychrophile isolated from Deep Lake, a hypersaline lake in Antarctica. H. lacusprofundi can grow between 0 and 42 degrees Celsius with optimal growth at 31 degrees Celsius. H. lacusprofundi differs from the already sequenced Halobacterium sp. NRC-1 in that it can grow on a variety of carbon sources including glucose, mannose, acetate, and ethanol, while NRC-1 has a more limited metabolic capacity and has not been shown to use sugars. The other sequenced halophile, Haloarcula marismortui, on the other hand has been shown to use a variety of sugars. H. lacusprofundi, as a psychrophile, provides a contrast to both sequenced halophiles, and comparison of the three will highlight adaptations to low temperature. These results can be compared with those of psychrophilic methanogens to determine whether they use similar mechanisms for cold adaptation. (HAMAP: HALLT)

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalorubrum
SpeciesHalorubrum lacusprofundi
StrainATCC 49239

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Halorubrum lacusprofundi ATCC 49239

Accession NumberNC_012029.1

Gene Summary

Adenine Count

452990 bp

Thymine Count

457259 bp

Guanine Count

912528 bp

Cytosine Count

912518 bp

Genome Length

2735295 bp

Protein-coding Genes

2745 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
dodecinHLAC_RS12390Not Available+2473964 - 24741647404.45
alanyl-trna editing proteinHLAC_RS12395Not Available+2474356 - 247565444969.1
air synthase family proteinHLAC_RS12400Not Available+2475651 - 247664333451.9
acyl-coa dehydrogenase family proteinHLAC_RS12405Not Available+2476719 - 247787941618.1
had family hydrolaseHLAC_RS12410Not Available+2477876 - 247852922721.4
duf5822 domain-containing proteinHLAC_RS12415Not Available-2478548 - 247887111158.9
3-methyl-2-oxobutanoate hydroxymethyltransferaseHLAC_RS12420Not Available+2479006 - 247981228233.0
duf460 domain-containing proteinHLAC_RS12425Not Available+2480557 - 248261476301.0
tyrosine--trna ligaseHLAC_RS12430Not Available+2482715 - 248370136420.4
endonuclease nucs domain-containing proteinHLAC_RS12435Not Available-2483750 - 248450226865.4

Displaying genes 2931 – 2940 of 3685 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites