Halorubrum lacusprofundi ATCC 49239

RodMotileAerobe

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halorubrum

Description

Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) is a psychrophile isolated from Deep Lake, a hypersaline lake in Antarctica. H. lacusprofundi can grow between 0 and 42 degrees Celsius with optimal growth at 31 degrees Celsius. H. lacusprofundi differs from the already sequenced Halobacterium sp. NRC-1 in that it can grow on a variety of carbon sources including glucose, mannose, acetate, and ethanol, while NRC-1 has a more limited metabolic capacity and has not been shown to use sugars. The other sequenced halophile, Haloarcula marismortui, on the other hand has been shown to use a variety of sugars. H. lacusprofundi, as a psychrophile, provides a contrast to both sequenced halophiles, and comparison of the three will highlight adaptations to low temperature. These results can be compared with those of psychrophilic methanogens to determine whether they use similar mechanisms for cold adaptation. (HAMAP: HALLT)

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalorubrum
SpeciesHalorubrum lacusprofundi
StrainATCC 49239

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Halorubrum lacusprofundi ATCC 49239

Accession NumberNC_012029.1

Gene Summary

Adenine Count

452990 bp

Thymine Count

457259 bp

Guanine Count

912528 bp

Cytosine Count

912518 bp

Genome Length

2735295 bp

Protein-coding Genes

2745 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
translation initiation factor if-6HLAC_RS04090Not Available-822065 - 82273022891.7
50s ribosomal protein l31eHLAC_RS04095Not Available-822732 - 82301010411.1
50s ribosomal protein l39eHLAC_RS04100Not Available-823011 - 8231636057.35
m20 family metallopeptidaseHLAC_RS04105Not Available-823260 - 82437839296.9
peptide-methionine (s)-s-oxide reductase msraHLAC_RS04110Not Available+824862 - 82539819974.8
6,7-dimethyl-8-ribityllumazine synthaseHLAC_RS04115Not Available+825733 - 82613713820.9
pyridoxal phosphate-dependent aminotransferaseHLAC_RS04120Not Available+826167 - 82732141093.4
universal stress proteinHLAC_RS04125Not Available+827390 - 82789917819.7
asp-trna(asn)/glu-trna(gln) amidotransferase subunit gatcHLAC_RS04130Not Available+828065 - 82840012052.3
asp-trna(asn)/glu-trna(gln) amidotransferase subunit gataHLAC_RS04135Not Available+828400 - 82970445042.8

Displaying genes 1231 – 1240 of 3685 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites