Kingdom
Methanobacteriati
Phylum
Methanobacteriota
Class
Halobacteria
Order
Halobacteriales
Family
Haloferacaceae
Genus
Halorubrum
Description
Taxonomy
| Kingdom | Methanobacteriati |
|---|---|
| Phylum | Methanobacteriota |
| Class | Halobacteria |
| Order | Halobacteriales |
| Family | Haloferacaceae |
| Genus | Halorubrum |
| Species | Halorubrum lacusprofundi |
| Strain | ATCC 49239 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 1 |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Aquatic |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | No |
Genome Summary
Halorubrum lacusprofundi ATCC 49239
Accession NumberNC_012029.1
Gene Summary
Adenine Count
452990 bp
Thymine Count
457259 bp
Guanine Count
912528 bp
Cytosine Count
912518 bp
Genome Length
2735295 bp
Protein-coding Genes
2745 genes
Non-Coding Genes
55 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 4-hydroxy-tetrahydrodipicolinate reductase | HLAC_RS03310 | Not Available | + | 684669 - 685460 | 27099.2 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | HLAC_RS03315 | Not Available | + | 685518 - 686357 | 29963.8 |
| diaminopimelate decarboxylase | HLAC_RS03320 | Not Available | + | 686354 - 687715 | 47930.7 |
| diaminopimelate epimerase | HLAC_RS03325 | Not Available | + | 687712 - 688641 | 32357.3 |
| m20/m25/m40 family metallo-hydrolase | HLAC_RS03330 | Not Available | + | 688638 - 689861 | 41640.9 |
| nyn domain-containing protein | HLAC_RS03335 | Not Available | - | 689858 - 690355 | 18242.2 |
| abc transporter substrate-binding protein | HLAC_RS03340 | Not Available | + | 690468 - 692408 | 71557.3 |
| abc transporter permease | HLAC_RS03345 | Not Available | + | 692448 - 693422 | 35292.0 |
| abc transporter permease | HLAC_RS03350 | Not Available | + | 693438 - 694622 | 43290.9 |
| abc transporter atp-binding protein | HLAC_RS03355 | Not Available | + | 694622 - 695662 | 37510.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.