Clostridium sp. SS2/1

Gram-positiveAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium sp. SS2/1 is a gram-positive, rod-shaped bacterium belonging to the genus Clostridium. This microbe is classified as a mesophile, thriving optimally at moderate temperatures typically found in natural environments. Clostridium sp. SS2/1 is a heterotroph, deriving its energy from organic compounds, and is strictly an obligate anaerobe, existing in environments devoid of oxygen.The gram-positive nature of Clostridium sp. SS2/1 indicates a thick peptidoglycan layer, which contributes to its structural integrity and resilience in anaerobic conditions. Its rod shape allows for efficient movement and interaction in various substrates, while the mesophilic temperature preference suggests that it can flourish in environments such as soils, sediments, and the gastrointestinal tracts of animals, where conditions are suitable for growth.As a heterotrophic organism, Clostridium sp. SS2/1 relies on complex organic substances for nutrition, which allows it to thrive in diverse ecological niches, particularly in decomposing organic matter. Being an obligate anaerobe, it is incapable of surviving in the presence of oxygen, making it well-adapted to anaerobic habitats such as deep soil layers and decaying organic materials, where it plays a crucial role in nutrient cycling. Notably, Clostridium species are renowned for their ability to produce spores, which are resistant to extreme conditions, allowing them to endure harsh environments until favorable growth conditions return. This spore-forming capability is a significant factor in their ecology, contributing to their persistence in various habitats. Clostridium sp. SS2/1 has garnered interest in biotechnology due to its potential applications in fermentation processes and bioproduction of biofuels, showcasing its versatility beyond its natural ecological contributions.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium sp. SS2/1
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium sp. SS2/1


Gene Summary

Adenine Count

998442 bp

Thymine Count

974310 bp

Guanine Count

594468 bp

Cytosine Count

574161 bp

Genome Length

3141381 bp

Protein-coding Genes

3101 genes

Non-Coding Genes

146 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinCLOSS21_00807Not AvailableNegative814214 - 81456112657.9
rhs repeat-associated core domain proteinCLOSS21_00808Not AvailableNegative814619 - 81513718939.9
hypothetical proteinCLOSS21_00809Not AvailableNegative815422 - 81588318359.6
hypothetical proteinCLOSS21_00810Not AvailableNegative815900 - 8161218610.48
hypothetical proteinCLOSS21_00811Not AvailableNegative816491 - 8166797541.3
hypothetical proteinCLOSS21_00812Not AvailableNegative816691 - 81721521522.4
rhs repeat-associated core domain proteinCLOSS21_00813Not AvailableNegative817440 - 81783214859.0
hypothetical proteinCLOSS21_00814Not AvailableNegative817836 - 81825815612.4
rhs repeat proteinCLOSS21_00815Not AvailableNegative818342 - 81863511326.1
hypothetical proteinCLOSS21_00816Not AvailableNegative818803 - 81930019646.4

Displaying genes 941 – 950 of 3247 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

328 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 328 metabolites

Health Effects

No health effects information available for this bacterium.