Clostridium sp. SS2/1

Gram-positiveAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium sp. SS2/1 is a gram-positive, rod-shaped bacterium belonging to the genus Clostridium. This microbe is classified as a mesophile, thriving optimally at moderate temperatures typically found in natural environments. Clostridium sp. SS2/1 is a heterotroph, deriving its energy from organic compounds, and is strictly an obligate anaerobe, existing in environments devoid of oxygen.The gram-positive nature of Clostridium sp. SS2/1 indicates a thick peptidoglycan layer, which contributes to its structural integrity and resilience in anaerobic conditions. Its rod shape allows for efficient movement and interaction in various substrates, while the mesophilic temperature preference suggests that it can flourish in environments such as soils, sediments, and the gastrointestinal tracts of animals, where conditions are suitable for growth.As a heterotrophic organism, Clostridium sp. SS2/1 relies on complex organic substances for nutrition, which allows it to thrive in diverse ecological niches, particularly in decomposing organic matter. Being an obligate anaerobe, it is incapable of surviving in the presence of oxygen, making it well-adapted to anaerobic habitats such as deep soil layers and decaying organic materials, where it plays a crucial role in nutrient cycling. Notably, Clostridium species are renowned for their ability to produce spores, which are resistant to extreme conditions, allowing them to endure harsh environments until favorable growth conditions return. This spore-forming capability is a significant factor in their ecology, contributing to their persistence in various habitats. Clostridium sp. SS2/1 has garnered interest in biotechnology due to its potential applications in fermentation processes and bioproduction of biofuels, showcasing its versatility beyond its natural ecological contributions.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium sp. SS2/1
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Clostridium sp. SS2/1


Gene Summary

Adenine Count

998442 bp

Thymine Count

974310 bp

Guanine Count

594468 bp

Cytosine Count

574161 bp

Genome Length

3141381 bp

Protein-coding Genes

3101 genes

Non-Coding Genes

146 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinCLOSS21_00054Not Available+58699 - 5961034232.9
hypothetical proteinCLOSS21_00055Not Available-59596 - 6021022997.2
pantetheine-phosphate adenylyltransferaseCLOSS21_00056Not Available-60218 - 6069717878.5
rna methyltransferase, rsmd familyCLOSS21_00057Not Available-60701 - 6125821004.4
small, acid-soluble spore protein, alpha/beta typeCLOSS21_00058Not Available-61487 - 617088198.7
acylphosphataseCLOSS21_00059Not Available-61843 - 6211510764.9
atp-dependent dna helicase recgCLOSS21_00060Not Available-62131 - 6416176750.2
dak2 domain fusion protein ylovCLOSS21_00061Not Available-64245 - 6590660552.2
hypothetical proteinCLOSS21_00062Not Available-65913 - 6626912958.0
ribosomal protein l28CLOSS21_00063Not Available+66463 - 666486652.26

Displaying genes 191 – 200 of 3247 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

68 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0003070D-methionineC5H11NO2SChemical structure of D-methionine348-67-4
Average149.211Da
Monoisotopic149.0510493Da
BASm0012579N-acetyl-D-glutamateC7H9NO5Not availableNot available
Average187.152Da
Monoisotopic187.049169554Da
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da
BASm0014031Butyric acidC4H8O2Chemical structure of Butyric acid107-92-6
Average88.1051Da
Monoisotopic88.0524295Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014035Glycolic acidC2H4O3Chemical structure of Glycolic acid79-14-1
Average76.0514Da
Monoisotopic76.016043994Da
BASm0014036Glyoxylic acidC2H2O3Chemical structure of Glyoxylic acid298-12-4
Average74.0355Da
Monoisotopic74.00039393Da

Displaying 1–10 of 68 metabolites