Ruminococcus callidus ATCC 27760

Gram-positiveCocciAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Oscillospiraceae

Genus

Ruminococcus

Description

Ruminococcus callidus ATCC 27760 is a Gram-positive, coccobacillus-shaped microbe that thrives in mesophilic temperatures, classified as a chemoheterotroph, and can be found in various body sites of numerous species, including the gastrointestinal tracts of humans, animals, and insects. As an obligate anaerobe, this microbe requires a strict anaerobic environment to survive and grow, making it well-suited to the low-oxygen conditions found in the rumen and gut. The Gram-positive characteristic of R. callidus indicates that it has a thick peptidoglycan layer in its cell wall, which provides structural support and maintains the cell's shape. Its coccobacillus shape allows it to colonize and adhere to surfaces, facilitating its role in the breakdown and fermentation of complex organic matter. As a chemoheterotroph, R. callidus relies on the consumption of organic compounds for energy and growth, utilizing a range of substrates including cellulose, xylan, and other polysaccharides. This ability to degrade and ferment complex carbohydrates makes it a key player in the digestive processes of herbivores and omnivores. The mesophilic temperature preference of R. callidus allows it to thrive in temperatures between 20-45°C, making it well-suited to the warm and stable environments found in the gastrointestinal tracts of animals. Ruminococcus callidus has been found to produce a range of volatile fatty acids, including acetate, propionate, and butyrate, which are essential for the health and well-being of its host. Its ability to degrade lignocellulose and other recalcitrant compounds has also led to its investigation for use in biotechnological applications, such as the production of biofuels and other value-added products.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyOscillospiraceae
GenusRuminococcus
SpeciesRuminococcus callidus
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruminococcus callidus ATCC 27760

Accession NumberAWVF00000000.1

Gene Summary

Adenine Count

779775 bp

Thymine Count

783801 bp

Guanine Count

754474 bp

Cytosine Count

752637 bp

Genome Length

3070687 bp

Protein-coding Genes

3394 genes

Non-Coding Genes

149 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+166009 - 166021Not Available
AttlNot AvailableNot Available+176844 - 176857Not Available
IntegraseRUMCAL_00166Not Available+176882 - 17779935713.5
hypothetical proteinRUMCAL_00167Not Available-177979 - 181146119894.0
hypothetical proteinRUMCAL_00168Not Available-181150 - 18167419585.6
hypothetical proteinRUMCAL_00169Not Available-181675 - 18207614500.2
dockerin type i repeat-containing domain proteinRUMCAL_00170Not Available-182120 - 18336145609.3
hypothetical proteinRUMCAL_00171Not Available-184862 - 18513710506.3
Gp514RUMCAL_00172Not Available-185137 - 18560417950.1
Amidoligase family proteinRUMCAL_00173Not Available-185616 - 18672542098.4

Displaying genes 1 – 10 of 3543 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

576 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000198tetracenomycin CC23H20O11Chemical structure of tetracenomycin CNot available
Average472.402Da
Monoisotopic472.100561464Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 576 metabolites