Escherichia coli APEC O1

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli APEC O1 is a gram-negative, rod-shaped bacterium that prefers mesophilic temperatures, exhibiting optimal growth between 37°C, making it well-suited to the warm-blooded environments in which it often resides. As a chemoheterotroph, it derives its energy and carbon from organic compounds, highlighting its reliance on the metabolic byproducts of other organisms. This strain is primarily associated with the intestinal tracts of humans and animals, particularly in the gut flora, but can also be found in various body sites across different species, including the urogenital tract, respiratory system, and bloodstream, especially in cases of infection. As a facultative anaerobe, E. coli APEC O1 can survive and grow in both the presence and absence of oxygen, allowing it to thrive in diverse ecological niches. This adaptability enables the bacterium to exploit both aerobic and anaerobic conditions, providing it a competitive advantage in various environments. One of the significant aspects of E. coli APEC O1 is its role in avian pathogenicity, where it can cause severe infections in poultry, leading to substantial economic losses in the poultry industry. This strain possesses virulence factors that facilitate colonization and invasion of host tissues, leading to conditions such as septicemia and colibacillosis. Additionally, E. coli APEC O1 has been subject to extensive genetic studies, revealing insights into its pathogenic mechanisms and resistance traits, including its ability to evade the host immune response. As antibiotic resistance becomes a growing concern, understanding this microbe's genetics is crucial for developing effective treatments and prevention strategies in both veterinary and human medicine.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainO1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli APEC O1
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementPairs - Singles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli APEC O1

Accession NumberNC_009838.1

Gene Summary

Adenine Count

65206 bp

Thymine Count

64095 bp

Guanine Count

57184 bp

Cytosine Count

54902 bp

Genome Length

241387 bp

Protein-coding Genes

212421 genes

Non-Coding Genes

28966 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+85866 - 85880Not Available
Transposase is26APECO1_RS27085Not Available+87813 - 8851727896.9
AttlNot AvailableNot Available+88556 - 88570Not Available
hypothetical proteinAPECO1_RS30795P06615-88884 - 8915310022.4
hypothetical proteinAPECO1_RS32180Not Available-89165 - 893567567.87
hypothetical proteinAPECO1_RS29995Not Available-89361 - 8969912566.4
tetracycline efflux mfs transporter tet(c)APECO1_RS27105P02981-89603 - 9079341572.9
tetracycline resistance transcriptional repressor tetr(c)APECO1_RS27110P03039+90886 - 9154524175.8
TransposaseAPECO1_RS27115P13694-91623 - 94595111065.0
ResolvaseAPECO1_RS27120P04130-94598 - 9515521221.6

Displaying genes 1 – 10 of 5481 in total

Pathways

12514 pathways

Metabolites

314 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da

Displaying 1–10 of 314 metabolites