Shewanella baltica OS195

Gram-negativeRodMotileAerobe; anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments. They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name but a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes. The genus Shewanella comprises 36 recognized and hundreds of uncharacterized cultivable species. OS195 was isolated in August 1986 from deep water of the Gotland Deep, a 240m deep anoxic basin in the Baltic Sea. It forms part of a large scale collection and study on Shewanella -isolates from the water column of the central Baltic Sea. In this study it was shown that Shewanella baltica had an increased abundance in the low oxic water and at the oxic-anoxic interface. It is fast growing and easy to be cultivated and shows a fast onset of growth even after prolonged periods of starvation. It also shows good growth at low organic carbon concentration. OS195 is a potential candidate to be used for bioremediation of sites contaminated with organic pollutants, heavy metals and for energy production in fuel cells. The genome-sequenced S. baltica strains form part of different clones according to RAPD analysis that fits well with the physiological features, a coincidence that was interpreted as different niches occupied by the different clones. OS195 formed part of the largest clone (clone "A") that was present in the Baltic Sea in two subsequent years (only 6 out of 13 clones were present over two years). Clone A is a versatile clone with respect to the use of electron acceptors and electron donors. Besides their potential use for biotechnological applications, the comparative genome analysis is targeted at a better understanding of the biogeochemical potential and the specific ecological niches of the different S. baltica - clones in the low oxic/anoxic water of the central Baltic Sea. (HAMAP: SHEB9)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella baltica
StrainOS195

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Shewanella baltica OS195
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe; anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Shewanella baltica OS195


Gene Summary

Adenine Count

1436527 bp

Thymine Count

1435856 bp

Guanine Count

1239510 bp

Cytosine Count

1235390 bp

Genome Length

5347283 bp

Protein-coding Genes

4375 genes

Non-Coding Genes

288 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Putative antirepressorSBAL195_RS04115Not Available-932710 - 93329422234.7
duf6232 family proteinSBAL195_RS04120Not Available-933610 - 93397813091.8
Putative phage-related tail tape measure proteinSBAL195_RS04125Not Available+934128 - 938408154129.0
Hypothetical proteinSBAL195_RS04130Not Available+938446 - 93881713488.2
Putative tail protein bSBAL195_RS04135Not Available+938825 - 94126387639.1
Tail assembly proteinSBAL195_RS04140Not Available+941276 - 94220233168.9
hypothetical proteinSBAL195_RS04145Not Available+942195 - 94248210593.9
Baseplate proteinSBAL195_RS04150Not Available+942479 - 94423964399.2
Hypothetical proteinSBAL195_RS04155Not Available+944265 - 9444777262.85
hypothetical proteinSBAL195_RS04160Not Available-944478 - 94563244385.2

Displaying genes 41 – 50 of 4861 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1794 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da

Displaying 1–10 of 1794 metabolites