Shewanella baltica OS195

Gram-negativeRodMotileAerobe; anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments. They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name but a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes. The genus Shewanella comprises 36 recognized and hundreds of uncharacterized cultivable species. OS195 was isolated in August 1986 from deep water of the Gotland Deep, a 240m deep anoxic basin in the Baltic Sea. It forms part of a large scale collection and study on Shewanella -isolates from the water column of the central Baltic Sea. In this study it was shown that Shewanella baltica had an increased abundance in the low oxic water and at the oxic-anoxic interface. It is fast growing and easy to be cultivated and shows a fast onset of growth even after prolonged periods of starvation. It also shows good growth at low organic carbon concentration. OS195 is a potential candidate to be used for bioremediation of sites contaminated with organic pollutants, heavy metals and for energy production in fuel cells. The genome-sequenced S. baltica strains form part of different clones according to RAPD analysis that fits well with the physiological features, a coincidence that was interpreted as different niches occupied by the different clones. OS195 formed part of the largest clone (clone "A") that was present in the Baltic Sea in two subsequent years (only 6 out of 13 clones were present over two years). Clone A is a versatile clone with respect to the use of electron acceptors and electron donors. Besides their potential use for biotechnological applications, the comparative genome analysis is targeted at a better understanding of the biogeochemical potential and the specific ecological niches of the different S. baltica - clones in the low oxic/anoxic water of the central Baltic Sea. (HAMAP: SHEB9)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella baltica
StrainOS195

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Shewanella baltica OS195
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe; anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Shewanella baltica OS195

Accession NumberNC_009997.1

Gene Summary

Adenine Count

1436527 bp

Thymine Count

1435856 bp

Guanine Count

1239510 bp

Cytosine Count

1235390 bp

Genome Length

5347283 bp

Protein-coding Genes

4375 genes

Non-Coding Genes

288 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Hypothetical proteinSBAL195_RS03920Not Available-907410 - 90773012039.7
hypothetical proteinSBAL195_RS03925Not Available-907727 - 9079578428.96
hypothetical proteinSBAL195_RS03930Not Available-907954 - 90823210255.4
hypothetical proteinSBAL195_RS03935Not Available-908233 - 90852610727.1
hypothetical proteinSBAL195_RS03940Not Available-908557 - 90890413013.8
Hypothetical proteinSBAL195_RS03945Not Available-908930 - 9091909617.6
hypothetical proteinSBAL195_RS03950Not Available-909187 - 90954013486.5
hypothetical proteinSBAL195_RS03955Not Available+909693 - 90998010678.1
hypothetical proteinSBAL195_RS03960Not Available+910068 - 91068523447.9
kiwa anti-phage protein kwab-like domain-containing proteinSBAL195_RS03965Not Available+910685 - 91170438641.2

Displaying genes 1 – 10 of 4861 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

92 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da

Displaying 1–10 of 92 metabolites