Burkholderia ambifaria MC40-6

Gram-negativeRodMotileFacultative aerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Burkholderia

Description

The Burkholderia cepacia complex (Bcc) comprises at least nine closely related species which can be correctly identified only by polyphasic taxonomic approaches. Members of the complex are among the most metabolically versatile microorganisms known, as they grow on more than 200 organic compounds, fix N2 and carry multiple antibiotic resistances. They are involved in important processes such as biodegradation of pollutants, biocontrol of root diseases but some also cause disease in plants, animals and humans. Bcc strains are isolated from very different habitats, including soil, rhizospheres, streams and infected plants, animals and human tissues, especially lungs of cystic fibrosis (CF) patients. Bcc strains have large and plastic genomes comprised of multiple (2 to 4) replicons, which is thought to give them their ecological versatility.Burkholderia ambifaria is generally found as the dominant Burkholderia cepacia complex species in natural environments where it is often associated with plant roots. Burkholderia ambifaria strain MC40-6 was found to occur in soil associated with maize roots (i.e., maize rhizosphere) at a density of 10,000 to 100,000 cells per g in Michigan, USA in August 2004. Its original niche may have been tall prairie grasses. It is able to directly fix atmospheric nitrogen. It shows no pathogenicity towards onion, a plant on which plant-pathogenic Burkholderia cepacia strains show maceration or chlorosis symptoms (modified from http://genome.jgi-psf.org/finished_microbes/bura6/bura6.home.html). (HAMAP: BURA4)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia ambifaria
StrainMC40-6

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Burkholderia ambifaria MC40-6
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative aerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Burkholderia ambifaria MC40-6


Gene Summary

Adenine Count

192072 bp

Thymine Count

192938 bp

Guanine Count

370459 bp

Cytosine Count

372478 bp

Genome Length

1127947 bp

Protein-coding Genes

1007 genes

Non-Coding Genes

5 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
amp-binding proteinBAMMC406_RS27750Not Available-42516 - 4415057586.3
hypothetical proteinBAMMC406_RS34820Not Available-44215 - 443554712.66
arac family transcriptional regulatorBAMMC406_RS27755Not Available+44470 - 4557039892.6
hamp domain-containing sensor histidine kinaseBAMMC406_RS27760Not Available-45597 - 4709054088.3
response regulator transcription factorBAMMC406_RS27765Not Available-47090 - 4780926884.2
hypothetical proteinBAMMC406_RS34825Not Available-48389 - 4871812123.0
gdl motif peptide-associated radical sam/spasm maturaseBAMMC406_RS27770Not Available-48830 - 5027853250.7
duf1842 domain-containing proteinBAMMC406_RS27775Not Available-50378 - 5096220769.0
duf1842 domain-containing proteinBAMMC406_RS27780Not Available-51009 - 5162621769.9
duf1843 domain-containing proteinBAMMC406_RS27785Not Available-51675 - 518636820.23

Displaying genes 31 – 40 of 6932 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1794 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 1794 metabolites