Burkholderia ambifaria MC40-6

Gram-negativeRodMotileFacultative aerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Burkholderia

Description

The Burkholderia cepacia complex (Bcc) comprises at least nine closely related species which can be correctly identified only by polyphasic taxonomic approaches. Members of the complex are among the most metabolically versatile microorganisms known, as they grow on more than 200 organic compounds, fix N2 and carry multiple antibiotic resistances. They are involved in important processes such as biodegradation of pollutants, biocontrol of root diseases but some also cause disease in plants, animals and humans. Bcc strains are isolated from very different habitats, including soil, rhizospheres, streams and infected plants, animals and human tissues, especially lungs of cystic fibrosis (CF) patients. Bcc strains have large and plastic genomes comprised of multiple (2 to 4) replicons, which is thought to give them their ecological versatility.Burkholderia ambifaria is generally found as the dominant Burkholderia cepacia complex species in natural environments where it is often associated with plant roots. Burkholderia ambifaria strain MC40-6 was found to occur in soil associated with maize roots (i.e., maize rhizosphere) at a density of 10,000 to 100,000 cells per g in Michigan, USA in August 2004. Its original niche may have been tall prairie grasses. It is able to directly fix atmospheric nitrogen. It shows no pathogenicity towards onion, a plant on which plant-pathogenic Burkholderia cepacia strains show maceration or chlorosis symptoms (modified from http://genome.jgi-psf.org/finished_microbes/bura6/bura6.home.html). (HAMAP: BURA4)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia ambifaria
StrainMC40-6

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Burkholderia ambifaria MC40-6
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative aerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Burkholderia ambifaria MC40-6

Accession NumberNC_010553.1

Gene Summary

Adenine Count

57785 bp

Thymine Count

59267 bp

Guanine Count

92915 bp

Cytosine Count

91625 bp

Genome Length

301592 bp

Protein-coding Genes

303 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
tetr family transcriptional regulatorBAMMC406_RS27605Not Available+174 - 85125574.6
xanthine dehydrogenase family protein subunit mBAMMC406_RS27610Not Available+909 - 176329543.7
molybdopterin cofactor-binding domain-containing proteinBAMMC406_RS27615Not Available+1744 - 456698901.5
mfs transporterBAMMC406_RS27620Not Available+4595 - 587245810.1
gnat family n-acetyltransferaseBAMMC406_RS27625Not Available-5945 - 658022884.9
pyruvate carboxylaseBAMMC406_RS27630Not Available-6875 - 10396128331.0
competence protein tfoxBAMMC406_RS35920Not Available-10634 - 107744954.06
amp-binding proteinBAMMC406_RS27635Not Available+11683 - 1333859943.4
hypothetical proteinBAMMC406_RS27640Not Available+13335 - 1422231676.7
3-oxoacyl-acp synthase iii family proteinBAMMC406_RS27645Not Available+14222 - 1532839935.4

Displaying genes 1 – 10 of 6932 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

97 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0001415beta-L-rhamnoseC6H12O5Chemical structure of beta-L-rhamnoseNot available
Average164.1565Da
Monoisotopic164.0684735Da

Displaying 1–10 of 97 metabolites