Thioalkalivibrio sp. K90mix

Gram-negativeRodMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Chromatiales

Family

Ectothiorhodospiraceae

Genus

Thioalkalivibrio

Description

Thioalkalivibrio sp. (strain K90mix) is an extremely salt tolerant (haloalkaliphilic), chemolithoautotrophic, sulfur-oxidizing Gram-negative bacterium isolated from a mixture of soda lake sediments. Thioalkalivibrio sp. uses CO2 as a carbon source and reduced sulfur compounds as an energy source. It has a pH optimum of 10 and can grow at salinities up to 4.3M of sodium and 3.6M of potassium. Thioalkalivibrio sp. can be used to remove noxious sulfur compounds from waste streams and energy carriers (bioremediation and carbon sequestration). (Adapted from: http://genome.jgi-psf.org/thi_k/thi_k.home.html). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderChromatiales
FamilyEctothiorhodospiraceae
GenusThioalkalivibrio
SpeciesThioalkalivibrio sp. K90mix
StrainK90mix

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Thioalkalivibrio sp. K90mix
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy source Chemolithoautotroph
PathogenicityNo

Genome Summary

Thioalkalivibrio sp. K90mix

Accession NumberNC_013889.1

Gene Summary

Adenine Count

470756 bp

Thymine Count

466003 bp

Guanine Count

900717 bp

Cytosine Count

907324 bp

Genome Length

2744800 bp

Protein-coding Genes

2588 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
16s rrna (cytosine(967)-c(5))-methyltransferase rsmbTK90_RS11405Q88RR3-2391486 - 239284148695.9
methionyl-trna formyltransferaseTK90_RS11410Q0A5C0-2392845 - 239380734347.1
peptide deformylaseTK90_RS11415B8GU11-2393807 - 239434019759.6
lysm peptidoglycan-binding domain-containing proteinTK90_RS11420Not Available+2394485 - 239565443623.0
dna-processing protein dpraTK90_RS11425P43862+2395683 - 239681640559.2
duf494 family proteinTK90_RS11430B8GU08+2396813 - 239729818424.7
dna topoisomerase iTK90_RS11435Q87AQ6+2397440 - 240000495176.4
l-threonylcarbamoyladenylate synthaseTK90_RS11440Q4UQ07+2399991 - 240058421008.0
oxygen-dependent coproporphyrinogen oxidaseTK90_RS11445B8GTF9+2400601 - 240153035392.1
porphobilinogen synthaseTK90_RS11450Q59643+2401553 - 240256936587.7

Displaying genes 2591 – 2600 of 2925 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

163 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00008001,8-diazacyclotetradecane-2,9-dioneC12H22N2O2Chemical structure of 1,8-diazacyclotetradecane-2,9-dioneNot available
Average226.32Da
Monoisotopic226.168127956Da

Displaying 1–10 of 163 metabolites