Beijerinckia indica subsp. indica ATCC 9039

Gram-negativeRodNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Beijerinckiaceae

Genus

Beijerinckia

Description

Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) was originally known as Azotobacter indicus. It produces a water-soluble extracellular polysaccharide that forms a biopolymer useful for a wide range of applications to textile printing, oil and adhesive industries. This strain belongs to the Beijerinckiaceae family, which includes both methanotrophic (bacteria able to oxidize methane) and nonmethanotrophic species (like Beijerinckia indica subsp. indica). Sequencing of strains from this family presents an ideal opportunity for a comparative genomic study into the evolution and biochemistry of obligate methanotrophy. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyBeijerinckiaceae
GenusBeijerinckia
SpeciesBeijerinckia indica
StrainATCC 9039

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Beijerinckia indica subsp. indica ATCC 9039
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNo

Genome Summary

Beijerinckia indica subsp. indica ATCC 9039

Accession NumberNC_010581.1

Gene Summary

Adenine Count

894110 bp

Thymine Count

896558 bp

Guanine Count

1188833 bp

Cytosine Count

1190652 bp

Genome Length

4170153 bp

Protein-coding Genes

3668 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
30s ribosomal protein s20BIND_RS00010Not Available+8 - 2719431.61
hypothetical proteinBIND_RS00015Not Available+413 - 74811695.0
chromosomal replication initiator protein dnaaBIND_RS00020Not Available+1509 - 304156543.4
crossover junction endodeoxyribonuclease ruvcBIND_RS00025Not Available+3144 - 367118439.6
holliday junction branch migration protein ruvaBIND_RS00030Not Available+3668 - 428521430.2
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsadBIND_RS00035Not Available-4319 - 537737065.1
hydroxymethylbilane synthaseBIND_RS00040Not Available+5533 - 654635810.2
uroporphyrinogen-iii synthaseBIND_RS00045Not Available+6552 - 729226411.9
abc transporter atp-binding proteinBIND_RS00050Not Available+7355 - 810126788.4
abc transporter permeaseBIND_RS00055Not Available+8098 - 893130678.4

Displaying genes 1 – 10 of 3958 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

48 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0002305(S)-2-ethyl-2-hydroxy-3-oxobutanoateC6H9O4Chemical structure of (S)-2-ethyl-2-hydroxy-3-oxobutanoateNot available
Average145.135Da
Monoisotopic145.0506324Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm0002833FMNH2C17H21N4O9PChemical structure of FMNH25666-16-0
Average456.3438Da
Monoisotopic456.1046148Da
BASm0002858all-trans-undecaprenyl phosphateC55H89O4PChemical structure of all-trans-undecaprenyl phosphateNot available
Average845.288Da
Monoisotopic844.6509455Da

Displaying 1–10 of 48 metabolites