Desulfovibrio vulgaris DP4

Gram-negativeRodMotileAnaerobe

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Nitratidesulfovibrio

Description

Desulfovibrio vulgaris subsp. vulgaris (strain DP4) is an anaerobic bacterium phylogenetically associated with the delta subdivision of the Proteobacteria. Desulfovibrio vulgaris is a sulfate reducer commonly found in a variety of soil and aquatic environments. It respires by electron transfer using the heme group in c-type cytochromes, and can corrode metal by cathodic depolarization using the same process. Its preferred carbon substrates are lactate and pyruvate. The ability of this species to reduce Uranium (VI)ox to Uranium (IV)red makes it a good candidate for bioremediation of sites with uranium-contaminated groundwater. Metal corrosion, a problem that is partly the result of the collective activity of these bacteria, produces billions of dollars of losses each year to the petroleum industry. These organisms are also responsible for the production of poisonous hydrogen sulfide gas in marine sediments and in terrestrial environments such as drilling sites for petroleum products. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusNitratidesulfovibrio
SpeciesNitratidesulfovibrio vulgaris
StrainDP4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Desulfovibrio vulgaris DP4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Desulfovibrio vulgaris DP4


Gene Summary

Adenine Count

639427 bp

Thymine Count

641428 bp

Guanine Count

1089813 bp

Cytosine Count

1092219 bp

Genome Length

3462887 bp

Protein-coding Genes

2821 genes

Non-Coding Genes

206 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinDVUL_RS17410Not Available+1746744 - 174743626953.5
Hypothetical proteinDVUL_RS07460Not Available-1747426 - 174850537079.8
Hypothetical proteinDVUL_RS07465Not Available-1748490 - 174917625084.2
Nucleoid dna-binding proteinDVUL_RS07470Not Available-1749173 - 174973320128.4
Hypothetical proteinDVUL_RS07475Not Available-1749730 - 175066532490.1
Qin prophageDVUL_RS07480Not Available-1750668 - 175120418797.2
Tail fiber proteinDVUL_RS18195Not Available-1751221 - 175261849879.9
Tail proteinDVUL_RS07490Not Available-1752615 - 175322622809.4
Baseplate j/gp47 family proteinDVUL_RS07495Not Available-1753223 - 175443443495.6
Plasmid maintenance system killer higbDVUL_RS07500Not Available+1754529 - 175480710584.6

Displaying genes 71 – 80 of 3027 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1605 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm00016962-heptyl-3-hydroxy-4(1H)-quinoloneC16H21NO2Chemical structure of 2-heptyl-3-hydroxy-4(1H)-quinoloneNot available
Average259.349Da
Monoisotopic259.15722892Da

Displaying 1–10 of 1605 metabolites