Desulfovibrio vulgaris DP4

Gram-negativeRodMotileAnaerobe

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfovibrionaceae

Genus

Nitratidesulfovibrio

Description

Desulfovibrio vulgaris subsp. vulgaris (strain DP4) is an anaerobic bacterium phylogenetically associated with the delta subdivision of the Proteobacteria. Desulfovibrio vulgaris is a sulfate reducer commonly found in a variety of soil and aquatic environments. It respires by electron transfer using the heme group in c-type cytochromes, and can corrode metal by cathodic depolarization using the same process. Its preferred carbon substrates are lactate and pyruvate. The ability of this species to reduce Uranium (VI)ox to Uranium (IV)red makes it a good candidate for bioremediation of sites with uranium-contaminated groundwater. Metal corrosion, a problem that is partly the result of the collective activity of these bacteria, produces billions of dollars of losses each year to the petroleum industry. These organisms are also responsible for the production of poisonous hydrogen sulfide gas in marine sediments and in terrestrial environments such as drilling sites for petroleum products. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusNitratidesulfovibrio
SpeciesNitratidesulfovibrio vulgaris
StrainDP4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Desulfovibrio vulgaris DP4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Desulfovibrio vulgaris DP4


Gene Summary

Adenine Count

639427 bp

Thymine Count

641428 bp

Guanine Count

1089813 bp

Cytosine Count

1092219 bp

Genome Length

3462887 bp

Protein-coding Genes

2821 genes

Non-Coding Genes

206 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinDVUL_RS05425Not Available-1284070 - 12842255898.33
C repressorDVUL_RS05430Not Available-1285042 - 128575226208.6
Putative transcriptional regulatorDVUL_RS18325Not Available+1285894 - 12861218219.82
phage regulatory cii family proteinDVUL_RS05435Not Available+1286234 - 128667416070.1
Adenylate kinaseDVUL_RS05440Not Available+1286671 - 128724320671.1
Dna primaseDVUL_RS05445Not Available+1287244 - 128973093152.0
hypothetical proteinDVUL_RS05450Not Available+1290137 - 129058616912.3
hypothetical proteinDVUL_RS05455Not Available+1290958 - 129163224649.2
Terminase large subunitDVUL_RS05460Not Available+1291622 - 129360175347.8
helix-turn-helix transcriptional regulatorDVUL_RS05465Not Available+1293604 - 12938227941.79

Displaying genes 31 – 40 of 3027 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites