Granulibacter bethesdensis CGDNIH1

Gram-negativeRodNon-motile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Acetobacterales

Family

Acetobacteraceae

Genus

Granulibacter

Description

Acetobacteraceae are alphaproteobacteria including the acetic acid bacteria, which incompletely oxidize carbohydrates and alcohols, leading to production of vinegar among other chemicals. They are found worldwide on plant material.G.bethesdensis is a non-motile Gram-negative rod able to growth on methanol as its sole carbon source, and encodes the enzymes necessary for conversion of alcohols to acetic acid making it both an acetic acid bacterium and a methylotroph. Strain CGDNIH1 was identified in excised lymph nodes from a 39 year old male patient with chronic granulomatous disease (CGD), a rare inherited disease of the phagocyte NADPH oxidase system causing defective production of toxic oxygen metabolites, impaired bacterial and fungal killing, and recurrent life-threatening infections with Staphylococcus aureus, Serratia marcescens, Burkholderia cepacia complex Nocardia and Aspergillus species, and now Granulibacter bethesdensis. This is the first reported case of invasive human disease caused by any of the Acetobacteraceae. It is surrounded by a capsule, which might confer increased resistance. (HAMAP: GRABC)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderAcetobacterales
FamilyAcetobacteraceae
GenusGranulibacter
SpeciesGranulibacter bethesdensis
StrainCGDNIH1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Granulibacter bethesdensis CGDNIH1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityYes

Genome Summary

Granulibacter bethesdensis CGDNIH1


Gene Summary

Adenine Count

555324 bp

Thymine Count

553175 bp

Guanine Count

798995 bp

Cytosine Count

800940 bp

Genome Length

2708434 bp

Protein-coding Genes

2394 genes

Non-Coding Genes

81 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
maf family proteinGBCGDNIH1_RS00665Not Available+3895 - 448821762.3
leucine--trna ligaseGBCGDNIH1_RS00685Not Available+4555 - 718297799.8
lps assembly lipoprotein lpteGBCGDNIH1_RS00775Not Available+7300 - 786020530.7
dna polymerase iii subunit deltaGBCGDNIH1_RS00875Not Available+7873 - 892837855.6
parb/repb/spo0j family partition proteinGBCGDNIH1_RS01295Not Available-8909 - 977531350.7
para family proteinGBCGDNIH1_RS01310Not Available-9772 - 1059629550.7
16s rrna (guanine(527)-n(7))-methyltransferase rsmgGBCGDNIH1_RS01440Not Available-10679 - 1132023379.6
trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmgGBCGDNIH1_RS01550Not Available-11308 - 1319768694.8
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeGBCGDNIH1_RS01625Not Available-13238 - 1456047163.1
(2fe-2s) ferredoxin domain-containing proteinGBCGDNIH1_RS25110Not Available-14557 - 1491313338.0

Displaying genes 31 – 40 of 2475 in total

Metabolites

1758 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 1758 metabolites