Paraburkholderia phymatum STM815

Gram-negativeRodNon-motileFacultative aerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Paraburkholderia

Description

Paraburkholderia phymatum STM815 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobic respiration and is nonsporulating. This microbe is primarily host-associated, indicating a close relationship with its host organism, which may influence its physiological characteristics and ecological roles. As a member of the Burkholderia genus, P. phymatum STM815 is likely to engage in complex interactions with its host, potentially contributing to nutrient cycling or plant health in symbiotic relationships. The facultative aerobic nature of this bacterium suggests it can adapt to varying oxygen levels, which may enhance its survival in diverse environments associated with its host. This adaptability to both aerobic and anaerobic conditions, combined with its nonsporulating trait, positions P. phymatum STM815 as a potentially significant player in the microbiome of its host, capable of thriving in fluctuating conditions without the need for sporulation as a survival strategy. Further research into its specific interactions and functions within its ecological niche could provide valuable insights into its role in host health and microbial community dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusParaburkholderia
SpeciesParaburkholderia phymatum
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Paraburkholderia phymatum STM815
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative aerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paraburkholderia phymatum STM815


Gene Summary

Adenine Count

364848 bp

Thymine Count

361432 bp

Guanine Count

587180 bp

Cytosine Count

591433 bp

Genome Length

1904893 bp

Protein-coding Genes

1675 genes

Non-Coding Genes

34 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
duf3331 domain-containing proteinBPHY_RS27925Not Available-44220 - 4460013937.6
sdr family oxidoreductaseBPHY_RS27930Not Available+44869 - 4562426552.6
amidohydrolase family proteinBPHY_RS27935Not Available+45837 - 4667030973.3
spoiie family protein phosphataseBPHY_RS27940Not Available+47137 - 4837845047.9
siab family protein kinaseBPHY_RS27945Not Available+48382 - 4894520742.8
duf1987 domain-containing proteinBPHY_RS27950Not Available+48964 - 4935914687.0
ggdef domain-containing proteinBPHY_RS27955Not Available+49362 - 5008726649.6
hypothetical proteinBPHY_RS41980Not Available-50130 - 502674859.27
nnru family proteinBPHY_RS27960Not Available+50449 - 5102720997.3
lysr family transcriptional regulatorBPHY_RS27965Not Available-51032 - 5192832079.7

Displaying genes 91 – 100 of 1709 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1776 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da

Displaying 1–10 of 1776 metabolites