Thermotoga petrophila RKU-1

Gram-negativeRodNon-motileAnaerobe

Kingdom

Thermotogati

Phylum

Thermotogota

Class

Thermotogae

Order

Thermotogales

Family

Thermotogaceae

Genus

Thermotoga

Description

Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) is a motile, anaerobic, heterotrophic, rod-shaped bacterium. It possesses an outer sheath-like structure characteristic of the order Thermotogales. It grows between 47 and 88 degrees Celsius, with an optimum at 80 degrees and at pH between 5.2 and 9, with an optimum at 7.0. It reduces elemental sulfur to hydrogen sulfide. Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) was isolated from a deep subterranean oil reservoir in Niigata, Japan. (EBI Integr8)

Taxonomy

Kingdom	Thermotogati
Phylum	Thermotogota
Class	Thermotogae
Order	Thermotogales
Family	Thermotogaceae
Genus	Thermotoga
Species	Thermotoga petrophila
Strain	RKU-1

Profile

Physiology
Gram staining properties	Negative
Shape	Rod
Mobility	No
Flagellar presence	Yes
Number of membranes	2

Ecology, Host, and Life Cycle
Oxygen requirements	Anaerobe
Optimal temperature	80
Temperature range	Hyperthermophilic
Habitat	Aquatic
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Nonsporulating
Energy source	Heterotroph
Pathogenicity	No

Genome Summary

Thermotoga petrophila RKU-1

Accession NumberNC_009486.1

Gene Summary

Adenine Count

491488 bp

Thymine Count

491363 bp

Guanine Count

413241 bp

Cytosine Count

427419 bp

Genome Length

1823511 bp

Protein-coding Genes

1810 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

Name	Locus Tag	UniProt	Strand	Coordinates	Molecular Weight
50s ribosomal protein l33	TPET_RS02370	Not Available	-	460964 - 461113	5744.04
Trna-tyr	Not Available	Not Available	+	461139 - 461225	Not Available
Trna-thr	Not Available	Not Available	+	461235 - 461310	Not Available
Trna-met	Not Available	Not Available	+	461334 - 461406	Not Available
Trna-met	Not Available	Not Available	+	461513 - 461588	Not Available
hypothetical protein	TPET_RS09520	Not Available	+	461645 - 461797	5893.66
fad-dependent thymidylate synthase	TPET_RS02395	Not Available	+	461888 - 462550	25977.4
outer membrane protein assembly factor	TPET_RS02400	Not Available	+	462547 - 464682	80662.8
5-(carboxyamino)imidazole ribonucleotide synthase	TPET_RS02405	Not Available	+	464696 - 465838	42575.8
5-(carboxyamino)imidazole ribonucleotide mutase	TPET_RS02410	Not Available	+	465826 - 466341	18618.8

Displaying genes 481 – 490 of 1862 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
BASm0000274	aldehydo-D-galacturonateC6H9O7		Not available	Average193.132Da Monoisotopic193.0353762Da
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6		Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0001111	keto-D-tagaturonateC6H9O7		Not available	Average193.132Da Monoisotopic193.0353762Da
BASm0001142	butanoateC4H7O2		Not available	Average87.099Da Monoisotopic87.045153045Da
BASm0001779	orotateC5H3N2O4		Not available	Average155.09Da Monoisotopic155.0098302Da
BASm0001865	diphosphateHO7P2		Not available	Average174.95Da Monoisotopic174.9213971Da
BASm0001921	(S)-3-methyl-2-oxopentanoateC6H9O3		`1460-34-0`	Average129.1339Da Monoisotopic129.0551692Da
BASm0002157	7-cyano-7-deazaguanineC7H5N5O		Not available	Average175.1475Da Monoisotopic175.0494098Da
BASm0002198	beta-D-ribofuranoseC5H10O5		`50-69-1`	Average150.1299Da Monoisotopic150.05282343Da
BASm0002305	(S)-2-ethyl-2-hydroxy-3-oxobutanoateC6H9O4		Not available	Average145.135Da Monoisotopic145.0506324Da

Displaying 1–10 of 63 metabolites