Xanthomonas oryzae pv. oryzicola BLS256

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas oryzae pv. oryzicola BLS256 is a rod-shaped, Gram-negative bacterium that is classified as an aerobe and is typically associated with host organisms. This microbe is part of the Xanthomonadaceae family and is known to thrive in environments where it can interact closely with its host, indicating its adaptation to a host-associated habitat. The aerobic nature of X. oryzae pv. oryzicola suggests that it relies on oxygen for its metabolic processes, which may influence its distribution and survival in various ecological niches. The rod shape of this bacterium is characteristic of many members within the Xanthomonas genus, contributing to its ability to colonize and persist in plant tissues. This morphological trait may enhance its motility and colonization capabilities in host environments, potentially facilitating interactions with plant immune systems. Understanding the ecological role of Xanthomonas oryzae pv. oryzicola BLS256 can provide insights into its dynamics within agricultural systems, particularly in rice cultivation, where interactions with the host plant could influence disease management strategies. The bacterium's aerobe status and host-associated lifestyle may also offer perspectives on its role in nutrient cycling and plant health within its ecological niche.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas oryzae
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Xanthomonas oryzae pv. oryzicola BLS256
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas oryzae pv. oryzicola BLS256

Accession NumberNC_017267.2

Gene Summary

Adenine Count

868176 bp

Thymine Count

868560 bp

Guanine Count

1549367 bp

Cytosine Count

1545643 bp

Genome Length

4831746 bp

Protein-coding Genes

4251936 genes

Non-Coding Genes

579810 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
biopolymer transporter exbdXOC_RS00055B0RLE8+13003 - 1341615020.3
pyridoxine 5'-phosphate synthaseXOC_RS00060B2SUX4-13712 - 1447926517.3
hypothetical proteinXOC_RS00065Not Available-14490 - 1475910085.5
cardiolipin synthaseXOC_RS00070C5D794-14834 - 1629454487.9
is30-like element is1112a family transposaseXOC_RS00080Not Available+17003 - 1795937052.9
membrane dipeptidaseXOC_RS00085Not Available+18266 - 1923135665.8
dna methyltransferaseXOC_RS00090Not Available+19476 - 1975110559.7
hypothetical proteinXOC_RS25220Not Available+19816 - 200468461.13
type vi secretion system vgr family proteinXOC_RS00100Not Available+20451 - 2317496848.4
membrane dipeptidaseXOC_RS00105Not Available+23242 - 2539579099.6

Displaying genes 11 – 20 of 4184 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

243 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 243 metabolites