Roseiflexus castenholzii DSM 13941

Gram-negativeFilamentousMotileAerobe; anaerobe

Kingdom

Bacillati

Phylum

Chloroflexota

Class

Chloroflexia

Order

Chloroflexales

Family

Roseiflexaceae

Genus

Roseiflexus

Description

Roseiflexus is a filamentous anoxygenic phototroph, one of the green filamentous bacteria. This lineage is placed on the deepest branch of all photosynthetic bacteria. R.castenholzii HL08 was isolated from a microbial mat in a Japanese hot spring. It is able to grow photoheterotrophically under anaerobic light conditions and also chemoheterotrophically under aerobic dark conditions. Optimal growth occurs at 50 degrees C and pH 7.5-8.0. The cells contain bacteriochlorophyll (Bchl) a and gamma-carotene derivatives as photosynthetic pigments, but lack Bchl c and chlorosomes, a type of light-harvesting structure. Like many other phototrophic bacteria it has gliding motility. Comparative genomics indicates that it appears to have the genetic capacity for CO2 reduction via the 3-hydroxypropionate pathway (adapted in part from PubMed 11837302 and 17635550). (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumChloroflexota
ClassChloroflexia
OrderChloroflexales
FamilyRoseiflexaceae
GenusRoseiflexus
SpeciesRoseiflexus castenholzii
StrainDSM 13941

Profile

Physiology
Gram staining propertiesNegative
ShapeFilamentous
MobilityYes
Flagellar presenceYes
Number of membranes1
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe; anaerobe
Optimal temperature50
Temperature rangeThermophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourcePhotosynthetic - Photoautotroph
PathogenicityNo

Genome Summary

Roseiflexus castenholzii DSM 13941

Accession NumberNC_009767.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
single-stranded dna-binding proteinRCAS_RS00170Not Available-33607 - 3413419481.0
glycosyltransferaseRCAS_RS00175Not Available+34407 - 3653980153.3
glycosyltransferase family 39 proteinRCAS_RS00180Not Available+36569 - 3863275280.5
deoxynucleoside kinaseRCAS_RS00185Not Available+38648 - 3930125816.8
duf5939 domain-containing proteinRCAS_RS23565Not Available+39423 - 4132470589.9
Trna-proNot AvailableNot Available+41302 - 41378Not Available
tetratricopeptide repeat proteinRCAS_RS00205Not Available+41610 - 45938153422.0
roadblock/lc7 domain-containing proteinRCAS_RS00210Not Available+45994 - 4634112461.6
nucleoside-diphosphate kinaseRCAS_RS00215Not Available+46487 - 4693616572.3
glycoside hydrolase 5 family proteinRCAS_RS00220Not Available-46943 - 4820847037.1

Displaying genes 31 – 40 of 4644 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

50 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0002305(S)-2-ethyl-2-hydroxy-3-oxobutanoateC6H9O4Chemical structure of (S)-2-ethyl-2-hydroxy-3-oxobutanoateNot available
Average145.135Da
Monoisotopic145.0506324Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da

Displaying 1–10 of 50 metabolites