Salinispora tropica CNB-440

Gram-positiverodMotileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micromonosporales

Family

Micromonosporaceae

Genus

Salinispora

Description

Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) is an aerobic seawater-requiring marine actinomycete isolated from coarse beach sand off the Bahamas. The genus Salinispora is distinct from other actinomycetes however in that it resides in ocean sediments and is the first bacterium of its type to require seawater for growth thus providing opportunities to study marine adaptations in Gram-positive bacteria. One significant feature of S. tropica is its ability to produce structurally unique secondary metabolites. This observation supports the exploitation of marine actinomycetes as a source of new medicines. The metabolites observed from S. tropica include salinosporamide A, a potent inhibitor of the 20S proteasome that is currently in human clinical trials for the treatment of cancer. Interestingly, it has been observed that the three closely related Salinispora species produce dramatically different suites of secondary metabolites. These metabolites represent the single most significant phenotypic difference observed among the three species and raise questions about the ecological roles and evolutionary significance of secondary metabolites. (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicromonosporales
FamilyMicromonosporaceae
GenusSalinispora
SpeciesSalinispora tropica
StrainCNB-440

Profile

Physiology
Gram staining propertiesPositive
Shaperod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Salinispora tropica CNB-440
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature28
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles - Clusters
SporulationSporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Salinispora tropica CNB-440


Gene Summary

Adenine Count

791604 bp

Thymine Count

791333 bp

Guanine Count

1803918 bp

Cytosine Count

1796476 bp

Genome Length

5183331 bp

Protein-coding Genes

4661 genes

Non-Coding Genes

105 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinSTROP_RS24505Not Available-590639 - 5908397507.99
Hypothetical proteinSTROP_RS02590Not Available-591145 - 59161816841.2
Hypothetical proteinSTROP_RS02595Not Available-591615 - 59209417324.4
ExonucleaseSTROP_RS02600Not Available-592120 - 59290529448.9
hypothetical proteinSTROP_RS02605Not Available-592886 - 59333516789.9
Putative primase (toprim)STROP_RS02610Not Available-593335 - 59400624480.1
Hnh endonucleaseSTROP_RS25980Not Available-593960 - 59444517724.1
Endonuclease viiSTROP_RS23495Not Available-594832 - 59527216235.4
Putative primase helicaseSTROP_RS02630Not Available-595272 - 59608429975.6
Hypothetical proteinSTROP_RS02635Not Available-596148 - 59661216790.9

Displaying genes 11 – 20 of 4766 in total

Metabolites

805 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da

Displaying 1–10 of 805 metabolites