Sinorhizobium medicae WSM419

Gram-negativeRodNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Sinorhizobium

Description

Sinorhizobium medicae WSM419, originally known as Rhizobium meliloti WSM419, is an acid-tolerant strain originally isolated from acidic soil in Sardinia. It is a motile, non-spore-forming, rod-shaped bacteria. It nodulates Medicago spp., is used to inoculate these plants commercially, and is thus studied for its acid-tolerance. It was placed in a new taxon based on phenotypic and phylogenetic studies of the 16S gene. It has one chromosome and three plasmids. (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Alphaproteobacteria
Order	Hyphomicrobiales
Family	Rhizobiaceae
Genus	Sinorhizobium
Species	Sinorhizobium medicae
Strain	WSM419

Profile

Physiology
Gram staining properties	Negative
Shape	Rod
Mobility	No
Flagellar presence	Yes
Number of membranes	2

Ecology, Host, and Life Cycle
Oxygen requirements	Aerobe
Optimal temperature	28
Temperature range	Mesophilic
Habitat	Multiple
Biotic relationship	Not Available
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Not Available
Pathogenicity	No

Genome Summary

Sinorhizobium medicae WSM419

Accession NumberNC_009620.1

Gene Summary

Adenine Count

301801 bp

Thymine Count

303712 bp

Guanine Count

482701 bp

Cytosine Count

482737 bp

Genome Length

1570951 bp

Protein-coding Genes

1462 genes

Non-Coding Genes

1 genes

# of Chromosomes/Plasmids

4

Genes

Name	Locus Tag	UniProt	Strand	Coordinates	Molecular Weight
hypothetical protein	SMED_RS32095	Not Available	+	1760184 - 1760357	6316.69
hypothetical protein	SMED_RS32560	Not Available	+	1760368 - 1760724	12590.1
hypothetical protein	SMED_RS08395	Not Available	+	1760717 - 1760899	6604.81
Hypothetical protein	SMED_RS08400	Not Available	+	1760896 - 1761267	13600.5
Hypothetical protein	SMED_RS08405	Not Available	+	1761267 - 1761806	19922.8
N4 gp22-like protein	SMED_RS08410	Not Available	+	1761803 - 1762168	13847.7
Excisionase	SMED_RS08415	Not Available	+	1762171 - 1762464	11184.4
Hydrolase	SMED_RS08420	Not Available	+	1762667 - 1763488	30359.5
Adenylate/guanylyl cyclase	SMED_RS08425	Not Available	+	1764394 - 1767762	123237.0
Attr	Not Available	Not Available	+	1768805 - 1768816	Not Available

Displaying genes 1561 – 1570 of 6537 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
BASm0000217	alpha-ribazoleC14H18N2O4		Not available	Average278.3037Da Monoisotopic278.126657074Da
BASm0000232	(4S)-perillyl alcoholC10H16O		Not available	Average152.237Da Monoisotopic152.1201151Da
BASm0000237	(R)-4'-phosphopantothenateC9H18NO8P		Not available	Average299.2149Da Monoisotopic299.0770031Da
BASm0000238	(R)-3-phenyllactateC9H9O3		Not available	Average165.169Da Monoisotopic165.05571773Da
BASm0000251	2-dehydropantoateC6H9O4		Not available	Average145.1333Da Monoisotopic145.050083776Da
BASm0000259	3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5		Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000260	3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5		Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000277	keto-L-sorboseC6H12O6		Not available	Average180.1559Da Monoisotopic180.0633881Da
BASm0000344	(2R,3S)-homoisocitrateC7H7O7		Not available	Average203.128Da Monoisotopic203.020823305Da
BASm0000377	(S)-malateC4H4O5		Not available	Average132.0716Da Monoisotopic132.005873238Da

Displaying 1–10 of 206 metabolites