Exiguobacterium sp. AT1b

Gram-positiveRodMotileFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Genus

Exiguobacterium

Description

Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) is a non-spore forming Gram-positive bacterium isolated from a slightly alkaline and highly carbonate hot spring water of Angel Terrace, which is part of Mammoth Terrace, Yellowstone National Park. Exiguobacterium sp. is a facultative anaerobe but grows more profusely aerobically. It is able to grow from 15 to 50 degrees Celsius. The cells are rods about 2 um in length, with rounded ends. They occur singly, in pairs or infrequently in chains. Exiguobacterium sp. possesses high nuclease activity and are able to metabolize cellulosic materials. It is also involved in the carbon cycling in hot environments. Through analysis of the transcriptome, experiments can be designed to study microbial survival under a variety of high temperature and low temperature conditions. The issue of adaptations to different temperatures is of interest in the field of astrobiology. Organisms that inhabit such diametrally opposite environments may be used as models for understanding cellular responses on astral bodies. (Adaptated from: http://genome.jgi-psf.org/exi_a/exi_a.home.html). (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
Family
GenusExiguobacterium
SpeciesExiguobacterium sp. AT1b
StrainAT1b

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Exiguobacterium sp. AT1b
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeThermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Exiguobacterium sp. AT1b

Accession NumberNC_012673.1

Gene Summary

Adenine Count

772231 bp

Thymine Count

773838 bp

Guanine Count

727277 bp

Cytosine Count

726549 bp

Genome Length

2999895 bp

Protein-coding Genes

2978 genes

Non-Coding Genes

140 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
sensor histidine kinaseEAT1B_RS02915Not Available-534342 - 53609666455.5
4-hydroxy-3-methylbut-2-enyl diphosphate reductaseEAT1B_RS02920Not Available+536226 - 53717935100.0
nif3-like dinuclear metal center hexameric proteinEAT1B_RS02925Not Available-537222 - 53833440561.6
trna (adenine(22)-n(1))-methyltransferaseEAT1B_RS02930Not Available-538334 - 53905026468.9
cytochrome c550EAT1B_RS02935Not Available-539146 - 53948411419.7
rna polymerase sigma factor rpodEAT1B_RS02940Not Available-539617 - 54071141816.1
dna primaseEAT1B_RS02945Not Available-540747 - 54255869337.7
pyruvate, water dikinase regulatory proteinEAT1B_RS02950Not Available-542685 - 54352731720.2
helix-turn-helix transcriptional regulatorEAT1B_RS02955Not Available-543514 - 54414323289.8
glycine--trna ligase subunit betaEAT1B_RS02960Not Available-544165 - 54621977242.2

Displaying genes 581 – 590 of 3118 in total

Pathways

1341 pathways

Metabolites

60 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm0002198beta-D-ribofuranoseC5H10O5Chemical structure of beta-D-ribofuranose50-69-1
Average150.1299Da
Monoisotopic150.05282343Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da

Displaying 1–10 of 60 metabolites