Caldicellulosiruptor saccharolyticus DSM 8903

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Caldicellulosiruptorales

Family

Caldicellulosiruptoraceae

Genus

Caldicellulosiruptor

Description

Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) is a thermophilic (70 degrees Celsius), strictly anaerobic asporogenous bacterium phylogenetically associated with the Firmicutes. This organism was isolated from a thermal spring in New Zealand. It hydrolyses a variety of polymeric carbohydrates (cellulose, hemicellulose, pectin, a -glucan (starch, glycogen), b-glucan (lichenan, laminarin), guar gum) to acetate, lactate, hydrogen and CO2. Trace amounts of ethanol are formed as well. Phylogenetic analysis showed that it constitutes a novel lineage within the Bacillus/Clostridium subphylum of the Gram-positive bacteria. According to a recent study by the US Department of Energy and the National Renewable Energy Laboratory (DOE/NREL), the desired future biofuel producer would have several features that distinguish it from currently used microorganisms: (i) high yield and low product inhibition, (ii) simultaneous utilisation of sugars (cellulose, hemicellulose, pectin), and (iii) growth at elevated temperatures: robust thermophilic organisms, with a decreased risk of contamination. A bacterium that meets all these criteria is Caldicellulosiruptor saccharolyticus, which is anticipated to play an important role in the development of renewable energy. This thermophilic bacterium efficiently converts an extraordinarily wide range of biomass components to the potential energy source hydrogen. Importantly, pilot fermentation experiments revealed the simultaneous degradation of glucose and xylose. Comparison of its genome with that of related microbes, also with potential for energy production, is expected to result in a gain of fundamental insight in the metabolic capacity and its regulation. Follow-up studies will be aimed at exploiting that knowledge for the engineering of an optimised microbial energy production system. (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderCaldicellulosiruptorales
FamilyCaldicellulosiruptoraceae
GenusCaldicellulosiruptor
SpeciesCaldicellulosiruptor saccharolyticus
StrainDSM 8903

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Caldicellulosiruptor saccharolyticus DSM 8903
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeThermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Caldicellulosiruptor saccharolyticus DSM 8903

Accession NumberNC_009437.1

Gene Summary

Adenine Count

984378 bp

Thymine Count

938754 bp

Guanine Count

554860 bp

Cytosine Count

492283 bp

Genome Length

2970275 bp

Protein-coding Genes

2874 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaCSAC_RS00005A0Q3U6+642 - 200652454.2
dna polymerase iii subunit betaCSAC_RS00010P52023+2227 - 333041236.7
dna replication/repair protein recfCSAC_RS00015A6LPB4+3358 - 440740711.1
extracellular matrix regulator rembCSAC_RS00020Not Available+4443 - 472710874.0
dna topoisomerase (atp-hydrolyzing) subunit bCSAC_RS00025O50627+4772 - 669172200.0
dna gyrase subunit aCSAC_RS00030P94605+6711 - 914091712.4
hypothetical proteinCSAC_RS14700Not Available+9305 - 94455180.31
beta-propeller domain-containing proteinCSAC_RS00035Q58949+9442 - 1134972681.1
carbamoyl-phosphate synthetase large chain oligomerizationCSAC_RS15760Not Available+11626 - 116791882.05
rpn family recombination-promoting nuclease/putative transposaseCSAC_RS00040Not Available-11759 - 1272437546.3

Displaying genes 1 – 10 of 2933 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

258 records
Metabolite IDMetabolite nameStructureCAS number
BASm0004072alpha-D-glucosyl di-trans,octa-cis-undecaprenyl diphosphateC61H100O12P2Chemical structure of alpha-D-glucosyl di-trans,octa-cis-undecaprenyl diphosphateNot available
Average1087.408Da
Monoisotopic1086.6701Da
BASm0004092UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineC41H61N9O28P2Chemical structure of UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineNot available
Average1189.924Da
Monoisotopic1189.312320676Da
BASm0004093di-trans-octa-cis-undecaprenyl diphospho-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineC87H139N7O23P2Chemical structure of di-trans-octa-cis-undecaprenyl diphospho-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineNot available
Average1713.045Da
Monoisotopic1711.941952079Da
BASm0004094di-trans-octa-cis-undecaprenyl diphospho-[N-acetyl-alpha-D-glucosaminyl-(1->4)]-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineC95H152N8O28P2Chemical structure of di-trans-octa-cis-undecaprenyl diphospho-[N-acetyl-alpha-D-glucosaminyl-(1->4)]-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineNot available
Average1916.239Da
Monoisotopic1915.021324602Da
BASm0004097L-alanyl-D-glutamateC8H13N2O5Chemical structure of L-alanyl-D-glutamateNot available
Average217.1992Da
Monoisotopic217.082446536Da
BASm0004098L-alanyl-L-glutamateC8H13N2O5Chemical structure of L-alanyl-L-glutamateNot available
Average217.1992Da
Monoisotopic217.082446536Da
BASm0004127D-allulose 6-phosphateC6H11O9PChemical structure of D-allulose 6-phosphateNot available
Average258.12Da
Monoisotopic258.015166092Da
BASm0004131(2E)-hexadecenoyl-CoAC37H60N7O17P3SChemical structure of (2E)-hexadecenoyl-CoA4460-95-1
Average999.895Da
Monoisotopic999.297923755Da
BASm0004172(R)-4'-phosphopantetheineC11H21N2O7PSChemical structure of (R)-4'-phosphopantetheineNot available
Average356.33Da
Monoisotopic356.081806356Da
BASm0004229CoA-disulfideC42H62N14O32P6S2Chemical structure of CoA-disulfideNot available
Average1524.99Da
Monoisotopic1524.156559Da

Displaying 81–90 of 258 metabolites