Caldicellulosiruptor saccharolyticus DSM 8903

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Caldicellulosiruptorales

Family

Caldicellulosiruptoraceae

Genus

Caldicellulosiruptor

Description

Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) is a thermophilic (70 degrees Celsius), strictly anaerobic asporogenous bacterium phylogenetically associated with the Firmicutes. This organism was isolated from a thermal spring in New Zealand. It hydrolyses a variety of polymeric carbohydrates (cellulose, hemicellulose, pectin, a -glucan (starch, glycogen), b-glucan (lichenan, laminarin), guar gum) to acetate, lactate, hydrogen and CO2. Trace amounts of ethanol are formed as well. Phylogenetic analysis showed that it constitutes a novel lineage within the Bacillus/Clostridium subphylum of the Gram-positive bacteria. According to a recent study by the US Department of Energy and the National Renewable Energy Laboratory (DOE/NREL), the desired future biofuel producer would have several features that distinguish it from currently used microorganisms: (i) high yield and low product inhibition, (ii) simultaneous utilisation of sugars (cellulose, hemicellulose, pectin), and (iii) growth at elevated temperatures: robust thermophilic organisms, with a decreased risk of contamination. A bacterium that meets all these criteria is Caldicellulosiruptor saccharolyticus, which is anticipated to play an important role in the development of renewable energy. This thermophilic bacterium efficiently converts an extraordinarily wide range of biomass components to the potential energy source hydrogen. Importantly, pilot fermentation experiments revealed the simultaneous degradation of glucose and xylose. Comparison of its genome with that of related microbes, also with potential for energy production, is expected to result in a gain of fundamental insight in the metabolic capacity and its regulation. Follow-up studies will be aimed at exploiting that knowledge for the engineering of an optimised microbial energy production system. (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderCaldicellulosiruptorales
FamilyCaldicellulosiruptoraceae
GenusCaldicellulosiruptor
SpeciesCaldicellulosiruptor saccharolyticus
StrainDSM 8903

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Caldicellulosiruptor saccharolyticus DSM 8903
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeThermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Caldicellulosiruptor saccharolyticus DSM 8903

Accession NumberNC_009437.1

Gene Summary

Adenine Count

984378 bp

Thymine Count

938754 bp

Guanine Count

554860 bp

Cytosine Count

492283 bp

Genome Length

2970275 bp

Protein-coding Genes

2874 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaCSAC_RS00005A0Q3U6+642 - 200652454.2
dna polymerase iii subunit betaCSAC_RS00010P52023+2227 - 333041236.7
dna replication/repair protein recfCSAC_RS00015A6LPB4+3358 - 440740711.1
extracellular matrix regulator rembCSAC_RS00020Not Available+4443 - 472710874.0
dna topoisomerase (atp-hydrolyzing) subunit bCSAC_RS00025O50627+4772 - 669172200.0
dna gyrase subunit aCSAC_RS00030P94605+6711 - 914091712.4
hypothetical proteinCSAC_RS14700Not Available+9305 - 94455180.31
beta-propeller domain-containing proteinCSAC_RS00035Q58949+9442 - 1134972681.1
carbamoyl-phosphate synthetase large chain oligomerizationCSAC_RS15760Not Available+11626 - 116791882.05
rpn family recombination-promoting nuclease/putative transposaseCSAC_RS00040Not Available-11759 - 1272437546.3

Displaying genes 1 – 10 of 2933 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

258 records
Metabolite IDMetabolite nameStructureCAS number
BASm00034972-C-methyl-D-erythritol 2,4-cyclic diphosphateC5H10O9P2Chemical structure of 2-C-methyl-D-erythritol 2,4-cyclic diphosphate143488-44-2
Average276.075Da
Monoisotopic275.9800049Da
BASm00035255-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamideC15H21N5O15P2Chemical structure of 5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamideNot available
Average573.303Da
Monoisotopic573.0531333Da
BASm0003686(2E,6E,10E)-geranylgeranyl diphosphateC20H33O7P2Chemical structure of (2E,6E,10E)-geranylgeranyl diphosphateNot available
Average447.426Da
Monoisotopic447.171798138Da
BASm0003763(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphateC11H12NO6PChemical structure of (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphateNot available
Average285.1898Da
Monoisotopic285.0402236Da
BASm00037914-deoxy-4-formamido-alpha-L-arabinopyranosyl di-trans,octa-cis-undecaprenyl phosphateC61H99NO8PChemical structure of 4-deoxy-4-formamido-alpha-L-arabinopyranosyl di-trans,octa-cis-undecaprenyl phosphateNot available
Average1005.436Da
Monoisotopic1004.71137973Da
BASm0003841N-[(R)-4-phosphopantothenoyl]-L-cysteineC12H20N2O9PSChemical structure of N-[(R)-4-phosphopantothenoyl]-L-cysteineNot available
Average399.33Da
Monoisotopic399.064359144Da
BASm0003866keto-D-fructuronateC6H9O7Chemical structure of keto-D-fructuronateNot available
Average193.132Da
Monoisotopic193.03537621Da
BASm0003983di-trans,octa-cis-undecaprenyl phosphateC55H89O4PChemical structure of di-trans,octa-cis-undecaprenyl phosphateNot available
Average845.288Da
Monoisotopic844.6509455Da
BASm0003987cob(I)alaminC62H88CoN13O14PChemical structure of cob(I)alamin18534-66-2
Average1329.3478Da
Monoisotopic1328.564331Da
BASm0004066di-trans,octa-cis-undecaprenolC55H90OChemical structure of di-trans,octa-cis-undecaprenolNot available
Average767.324Da
Monoisotopic766.6991675Da

Displaying 71–80 of 258 metabolites