Caldicellulosiruptor saccharolyticus DSM 8903

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Caldicellulosiruptorales

Family

Caldicellulosiruptoraceae

Genus

Caldicellulosiruptor

Description

Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) is a thermophilic (70 degrees Celsius), strictly anaerobic asporogenous bacterium phylogenetically associated with the Firmicutes. This organism was isolated from a thermal spring in New Zealand. It hydrolyses a variety of polymeric carbohydrates (cellulose, hemicellulose, pectin, a -glucan (starch, glycogen), b-glucan (lichenan, laminarin), guar gum) to acetate, lactate, hydrogen and CO2. Trace amounts of ethanol are formed as well. Phylogenetic analysis showed that it constitutes a novel lineage within the Bacillus/Clostridium subphylum of the Gram-positive bacteria. According to a recent study by the US Department of Energy and the National Renewable Energy Laboratory (DOE/NREL), the desired future biofuel producer would have several features that distinguish it from currently used microorganisms: (i) high yield and low product inhibition, (ii) simultaneous utilisation of sugars (cellulose, hemicellulose, pectin), and (iii) growth at elevated temperatures: robust thermophilic organisms, with a decreased risk of contamination. A bacterium that meets all these criteria is Caldicellulosiruptor saccharolyticus, which is anticipated to play an important role in the development of renewable energy. This thermophilic bacterium efficiently converts an extraordinarily wide range of biomass components to the potential energy source hydrogen. Importantly, pilot fermentation experiments revealed the simultaneous degradation of glucose and xylose. Comparison of its genome with that of related microbes, also with potential for energy production, is expected to result in a gain of fundamental insight in the metabolic capacity and its regulation. Follow-up studies will be aimed at exploiting that knowledge for the engineering of an optimised microbial energy production system. (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderCaldicellulosiruptorales
FamilyCaldicellulosiruptoraceae
GenusCaldicellulosiruptor
SpeciesCaldicellulosiruptor saccharolyticus
StrainDSM 8903

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Caldicellulosiruptor saccharolyticus DSM 8903
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeThermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Caldicellulosiruptor saccharolyticus DSM 8903

Accession NumberNC_009437.1

Gene Summary

Adenine Count

984378 bp

Thymine Count

938754 bp

Guanine Count

554860 bp

Cytosine Count

492283 bp

Genome Length

2970275 bp

Protein-coding Genes

2874 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaCSAC_RS00005A0Q3U6+642 - 200652454.2
dna polymerase iii subunit betaCSAC_RS00010P52023+2227 - 333041236.7
dna replication/repair protein recfCSAC_RS00015A6LPB4+3358 - 440740711.1
extracellular matrix regulator rembCSAC_RS00020Not Available+4443 - 472710874.0
dna topoisomerase (atp-hydrolyzing) subunit bCSAC_RS00025O50627+4772 - 669172200.0
dna gyrase subunit aCSAC_RS00030P94605+6711 - 914091712.4
hypothetical proteinCSAC_RS14700Not Available+9305 - 94455180.31
beta-propeller domain-containing proteinCSAC_RS00035Q58949+9442 - 1134972681.1
carbamoyl-phosphate synthetase large chain oligomerizationCSAC_RS15760Not Available+11626 - 116791882.05
rpn family recombination-promoting nuclease/putative transposaseCSAC_RS00040Not Available-11759 - 1272437546.3

Displaying genes 1 – 10 of 2933 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

258 records
Metabolite IDMetabolite nameStructureCAS number
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm0002243S-methyl-5'-thioinosineC11H14N4O4SChemical structure of S-methyl-5'-thioinosineNot available
Average298.32Da
Monoisotopic298.0735761Da
BASm0002282(2R)-2,3-dihydroxy-3-methylbutanoateC5H9O4Chemical structure of (2R)-2,3-dihydroxy-3-methylbutanoateNot available
Average133.1226Da
Monoisotopic133.0500838Da
BASm0002305(S)-2-ethyl-2-hydroxy-3-oxobutanoateC6H9O4Chemical structure of (S)-2-ethyl-2-hydroxy-3-oxobutanoateNot available
Average145.135Da
Monoisotopic145.0506324Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm0002546(indol-3-yl)acetyl-CoAC31H39N8O17P3SChemical structure of (indol-3-yl)acetyl-CoANot available
Average920.68Da
Monoisotopic920.1388683Da
BASm0002593(2E)-dodecenoyl-CoAC33H52N7O17P3SChemical structure of (2E)-dodecenoyl-CoA1066-12-2
Average943.789Da
Monoisotopic943.2353235Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da
BASm0002749ADP-alpha-D-glucoseC16H23N5O15P2Chemical structure of ADP-alpha-D-glucoseNot available
Average587.329Da
Monoisotopic587.0676862Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da

Displaying 31–40 of 258 metabolites