Acidiphilium cryptum JF-5

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Acetobacterales

Family

Acidocellaceae

Genus

Acidiphilium

Description

Acidiphilium cryptum (strain JF-5) is an acidophilic dissimilatory iron-reducing bacterium (DIRB) of the alpha subdivision of the Proteobacteria. This bacteria is detected in a variety of extreme low pH, radionuclide- and heavy-metal contaminated habitats where Fe(III) reduction is taking place, and may represent a significant proportion of metal-transforming organisms in these environments. Strain JF-5 serves as a model organism for facultative iron-respiring Alphaproteobacterium. It utilizes glucose as an electron donor with the concomitant reduction of soluble and solid-phase Fe(III). Major findings for this bacterium are a novel outer-membrane cytochrome c involved in iron respiration and a Cr(VI) reductase enzyme. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderAcetobacterales
FamilyAcidocellaceae
GenusAcidiphilium
SpeciesAcidiphilium cryptum
StrainJF-5

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Acidiphilium cryptum JF-5
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature35
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Acidiphilium cryptum JF-5

Accession NumberNC_009472.1

Gene Summary

Adenine Count

1685 bp

Thymine Count

1740 bp

Guanine Count

2691 bp

Cytosine Count

2665 bp

Genome Length

8781 bp

Protein-coding Genes

11 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

9

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
carbon-nitrogen hydrolase family proteinACRY_RS02635Not Available-39607 - 4048231252.3
gnat family n-acetyltransferaseACRY_RS02640Not Available-40479 - 4100019124.6
cytochrome cACRY_RS02645O34215-41089 - 4281661276.7
Trna-lysNot AvailableNot Available+42985 - 43060Not Available
Trna-thrNot AvailableNot Available+43236 - 43310Not Available
5-aminolevulinate synthaseACRY_RS02660P08080-43357 - 4458343778.6
fad-dependent thymidylate synthaseACRY_RS02665Q5FR18-44723 - 4565535102.8
Tmrna,resume consensus sequence (at 225): gacaagtgccaacgataaNot AvailableNot Available+45742 - 46102Not Available
hypothetical proteinACRY_RS02670Not Available-46354 - 4679415250.8
para family partition atpaseACRY_RS02675Not Available-46791 - 4742021975.7

Displaying genes 41 – 50 of 3765 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

26 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00026123-oxohexadecanoyl-CoAC37H64N7O18P3SChemical structure of 3-oxohexadecanoyl-CoANot available
Average1019.926Da
Monoisotopic1019.324139Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da
BASm0002826(2R)-3-phospho-glyceroyl phosphateC3H4O10P2Chemical structure of (2R)-3-phospho-glyceroyl phosphateNot available
Average262.005Da
Monoisotopic261.9301646Da
BASm0003061oxidized coenzyme F420-2C29H31N5O18PChemical structure of oxidized coenzyme F420-2Not available
Average768.561Da
Monoisotopic768.142914076Da
BASm00032005,6,7,8-tetrahydromethanopterinC30H45N6O16PChemical structure of 5,6,7,8-tetrahydromethanopterinNot available
Average776.6827Da
Monoisotopic776.2629659Da
BASm00032075-methyl-5,6,7,8-tetrahydromethanopterinC31H44N6O16PChemical structure of 5-methyl-5,6,7,8-tetrahydromethanopterinNot available
Average787.694Da
Monoisotopic787.2567871Da

Displaying 1–10 of 26 metabolites