Halorhodospira halophila SL1

Gram-negativeSpirillaMotileAnaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Chromatiales

Family

Ectothiorhodospiraceae

Genus

Halorhodospira

Description

Halorhodospira (formely Ectothiorhodospira) halophila (strain DSM244 / SL1) is an extremely halophilic purple phototrophic Gram-negative bacterium phylogenetically associated with the gamma subdivision of the Proteobacteria. This is one of the most halophilic eubacteria known. It produces organic solutes such as glycine betaine, ectoine, and trehalose to balance the osmotic pressure. This organism oxidizes sulfide to sulfur, which is deposited outside the cell and further oxidized to sulfate. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderChromatiales
FamilyEctothiorhodospiraceae
GenusHalorhodospira
SpeciesHalorhodospira halophila
StrainSL1

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityYes
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatFresh water - Mud
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourcePhototroph - Photosynthetic
PathogenicityNo

Genome Summary

Halorhodospira halophila SL1

Accession NumberNC_008789.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
sigma-e factor negative regulatory proteinHHAL_RS12350Not Available-41289 - 4196924438.4
rna polymerase sigma factor rpoeHHAL_RS00220Not Available-41999 - 4258322368.4
l-aspartate oxidaseHHAL_RS00225Not Available+42762 - 4440559790.8
succinate dehydrogenase assembly factor 2HHAL_RS00230Not Available-44798 - 4505810204.2
succinate dehydrogenase iron-sulfur subunitHHAL_RS00235Not Available-45076 - 4586429615.3
succinate dehydrogenase flavoprotein subunitHHAL_RS00240Not Available-45884 - 4767464904.0
succinate dehydrogenase, hydrophobic membrane anchor proteinHHAL_RS00245Not Available-47682 - 4806513921.3
succinate dehydrogenase, cytochrome b556 subunitHHAL_RS00250Not Available-48068 - 4845714338.9
ygfz/gcvt domain-containing proteinHHAL_RS00255Not Available+48718 - 4967433586.2
lysine--trna ligaseHHAL_RS00260Not Available-49687 - 5117456003.4

Displaying genes 41 – 50 of 2518 in total

Pathways

23 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling pathway thumbnail
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Show All 23 Pathways

Metabolites

152 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da

Displaying 1–10 of 152 metabolites