Shigella boydii CDC 3083-94 str. BS512

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella boydii CDC 3083-94 str. BS512 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain optimally thrives at a temperature of 37.0°C, aligning with the physiological conditions of its host-associated habitat. As a chemoorganotroph, it derives its energy from organic compounds, which reflects its adaptation to environments rich in host-derived nutrients. S. boydii is classified as a facultative anaerobe, allowing it to survive in both aerobic and anaerobic conditions, which may enhance its versatility in colonizing various niches within the host. The combination of these traits suggests that S. boydii has evolved to effectively exploit the microenvironments present in the gastrointestinal tract of its hosts. Understanding the metabolic capabilities and environmental adaptability of this strain could provide insights into its ecological role and potential implications for host-microbe interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella boydii
StrainCDC 3083-94 BS512

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella boydii CDC 3083-94 str. BS512
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Shigella boydii CDC 3083-94 str. BS512


Gene Summary

Adenine Count

526 bp

Thymine Count

578 bp

Guanine Count

550 bp

Cytosine Count

435 bp

Genome Length

2089 bp

Protein-coding Genes

2 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
protein repSBBS512_RS00005Not Available+703 - 166837224.5
hypothetical proteinSBBS512_RS00010Not Available+1672 - 193810190.5
replication initiation proteinSBBS512_RS00245Not Available+352 - 128735563.4
conjugal transfer protein tradSBBS512_RS00250Not Available-1481 - 192716227.6
moba/mobl family proteinSBBS512_RS00255Not Available+2099 - 364959329.8
hypothetical proteinSBBS512_RS00260Not Available-3845 - 494542593.0

Displaying genes 1 – 6 of 6 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1803 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 1803 metabolites