Pelobacter propionicus DSM 2379

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfuromonadia

Order

Desulfuromonadales

Family

Desulfuromonadaceae

Genus

Pelobacter

Description

Pelobacter propionicus (strain DSM 2379) is an anaerobic bacteria phylogenetically associated with the delta subdivision of the Proteobacteria. This species is ubiquitous in both marine and fresh water, and in anaerobic sedmiments. It is able to convert the unsaturated hydrocarbon acetylene to acetate and ethanol via acetylaldehyde as an intermediate. Pelobacter may survive in some sediments as an Fe(III) or elemental sulfur reducer as well as growing fermentatively as an ethanol-oxidizing acetogen. Organisms that can completely oxidize organic acids with Fe(III) serving as the sole electron acceptor are responsible for most of the oxidation of organic matter in anaerobic sediments. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfuromonadia
OrderDesulfuromonadales
FamilyDesulfuromonadaceae
GenusPelobacter
SpeciesPelobacter propionicus
StrainDSM 2379

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Pelobacter propionicus DSM 2379
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Pelobacter propionicus DSM 2379

Accession NumberNC_008609.1

Gene Summary

Adenine Count

824900 bp

Thymine Count

817411 bp

Guanine Count

1184259 bp

Cytosine Count

1181430 bp

Genome Length

4008000 bp

Protein-coding Genes

3627 genes

Non-Coding Genes

79 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
exodeoxyribonuclease vii small subunitPPRO_RS09295Not Available-2010514 - 20107328194.54
Exonuclease vii large subunitPPRO_RS09300Not Available-2010729 - 201232160010.9
hypothetical proteinPPRO_RS09305Not Available-2012318 - 20125729584.39
Putative nucleasePPRO_RS09310Not Available-2012572 - 201336329198.1
Histone-like prokaryotic dna-binding protein familyPPRO_RS09315Not Available-2013360 - 201364410331.5
Putative uvrd-like helicasePPRO_RS09320Not Available-2013688 - 201546367382.0
OldPPRO_RS09325Not Available-2015460 - 201757179896.2
AttrNot AvailableNot Available+2022109 - 2022120Not Available
chromosomal replication initiator protein dnaaPPRO_RS00005Not Available+1 - 135351294.6
dna polymerase iii subunit betaPPRO_RS00010Not Available+1565 - 268641809.5

Displaying genes 11 – 20 of 3737 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

80 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da

Displaying 1–10 of 80 metabolites