Pelobacter propionicus DSM 2379

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfuromonadia

Order

Desulfuromonadales

Family

Desulfuromonadaceae

Genus

Pelobacter

Description

Pelobacter propionicus (strain DSM 2379) is an anaerobic bacteria phylogenetically associated with the delta subdivision of the Proteobacteria. This species is ubiquitous in both marine and fresh water, and in anaerobic sedmiments. It is able to convert the unsaturated hydrocarbon acetylene to acetate and ethanol via acetylaldehyde as an intermediate. Pelobacter may survive in some sediments as an Fe(III) or elemental sulfur reducer as well as growing fermentatively as an ethanol-oxidizing acetogen. Organisms that can completely oxidize organic acids with Fe(III) serving as the sole electron acceptor are responsible for most of the oxidation of organic matter in anaerobic sediments. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfuromonadia
OrderDesulfuromonadales
FamilyDesulfuromonadaceae
GenusPelobacter
SpeciesPelobacter propionicus
StrainDSM 2379

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Pelobacter propionicus DSM 2379
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Pelobacter propionicus DSM 2379


Gene Summary

Adenine Count

824900 bp

Thymine Count

817411 bp

Guanine Count

1184259 bp

Cytosine Count

1181430 bp

Genome Length

4008000 bp

Protein-coding Genes

3627 genes

Non-Coding Genes

79 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+2001650 - 2001661Not Available
IntegrasePPRO_RS09250Not Available+2001971 - 200325449558.6
nitroreductase family proteinPPRO_RS09255Not Available-2003622 - 200444630757.2
sdr family oxidoreductasePPRO_RS09260Not Available-2004470 - 200522826688.9
nitroreductase family proteinPPRO_RS09265Not Available-2005253 - 200584621271.1
hypothetical proteinPPRO_RS09270Not Available-2005873 - 200620512700.0
Putative recd/traa family helicasePPRO_RS09275Not Available-2006218 - 200840479526.2
upf0149 family proteinPPRO_RS21655Not Available-2008430 - 200917327671.4
Hypothetical proteinPPRO_RS09285Not Available-2009212 - 200988025266.1
cysteine hydrolase family proteinPPRO_RS09290Not Available-2009941 - 201050119884.0

Displaying genes 1 – 10 of 3737 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1717 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 1717 metabolites