Syntrophobacter fumaroxidans MPOB

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Syntrophobacteria

Order

Syntrophobacterales

Family

Syntrophobacteraceae

Genus

Syntrophobacter

Description

Syntropobacter fumaroxidans is a syntrophic propionate-oxidizing bacterium, which was isolated from a culture enriched from anaerobic granular sludge. It oxidizes propionate syntrophically in co-culture with the hydrogen- and formate-utilizing Methanospirillum hungateii, and is able to oxidize propionate and other organic compounds in pure culture with sulfate or fumarate as the electron acceptor. Additionally, it ferments fumarate. It is a non-motile, non-spore-forming, Gram- bacteria. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassSyntrophobacteria
OrderSyntrophobacterales
FamilySyntrophobacteraceae
GenusSyntrophobacter
SpeciesSyntrophobacter fumaroxidans
StrainMPOB

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Syntrophobacter fumaroxidans MPOB
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementSingles - Pairs
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Syntrophobacter fumaroxidans MPOB

NC_008554.1

Gene Summary

Adenine Count

1005043 bp

Thymine Count

993616 bp

Guanine Count

1497104 bp

Cytosine Count

1494488 bp

Genome Length

4990251 bp

Protein-coding Genes

3955 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
2_nc_021793: structural proteinSFUM_RS21695Not Available+2290794 - 229119515039.7
hypothetical proteinSFUM_RS09680Not Available+2291280 - 229164213992.0
hypothetical proteinSFUM_RS09685Not Available+2291639 - 22918819352.45
hypothetical proteinSFUM_RS09690Not Available+2291951 - 229254722047.4
Portal proteinSFUM_RS09695Not Available+2292552 - 229409357578.1
Portal proteinSFUM_RS09700Not Available+2294150 - 229589864167.7
Minor capsid proteinSFUM_RS21700Not Available+2295895 - 229727152419.2
Virion morphogenesis proteinSFUM_RS21705Not Available+2297372 - 229787818180.2
Putative proteaseSFUM_RS09715Not Available+2297931 - 229901039148.3
Hypothetical proteinSFUM_RS09720Not Available+2299022 - 229941713434.9

Displaying genes 1 – 10 of 4055 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

61 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0017450(R) 2,3-Dihydroxy-3-methylvalerateC6H12O4Chemical structure of (R) 2,3-Dihydroxy-3-methylvalerate562-43-6
Average148.1571Da
Monoisotopic148.073558872Da
BASm0017553N-(5-Phospho-D-ribosyl)anthranilateC12H16NO9PChemical structure of N-(5-Phospho-D-ribosyl)anthranilate4220-99-9
Average349.2305Da
Monoisotopic349.056267627Da
BASm0017645Cyclic pyranopterin monophosphateC10H14N5O8PChemical structure of Cyclic pyranopterin monophosphateNULL
Average363.2206Da
Monoisotopic363.057998961Da
BASm00177315,10-MethenyltetrahydrofolateC20H22N7O6Chemical structure of 5,10-Methenyltetrahydrofolate7444-29-3
Average456.432Da
Monoisotopic456.163156471Da
BASm00191503b-AllotetrahydrocortisolC19H35N5O6SeChemical structure of 3b-AllotetrahydrocortisolNULL
Average508.489Da
Monoisotopic509.175256Da
BASm0019931N-Acetylglutamic acidC7H11NO5Chemical structure of N-Acetylglutamic acid1188-37-0
Average189.1659Da
Monoisotopic189.063722467Da
BASm00199745-Methylthioribulose 1-phosphateC6H13O7PSChemical structure of 5-Methylthioribulose 1-phosphate86316-83-8
Average260.202Da
Monoisotopic260.011959972Da
BASm00200023-Dehydroshikimic acidC7H8O5Chemical structure of 3-Dehydroshikimic acid27655-56-7
Average172.1354Da
Monoisotopic172.037173366Da
BASm00202981,1-Diethoxy ethaneC6H14O2Chemical structure of 1,1-Diethoxy ethane75-07-0
Average118.1742Da
Monoisotopic118.099379692Da
BASm0034704coenzyme B12C72H100CoN18O17PChemical structure of coenzyme B12NULL
Average1579.608Da
Monoisotopic1578.65834Da

Displaying 51–60 of 61 metabolites