Syntrophobacter fumaroxidans MPOB

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Syntrophobacteria

Order

Syntrophobacterales

Family

Syntrophobacteraceae

Genus

Syntrophobacter

Description

Syntropobacter fumaroxidans is a syntrophic propionate-oxidizing bacterium, which was isolated from a culture enriched from anaerobic granular sludge. It oxidizes propionate syntrophically in co-culture with the hydrogen- and formate-utilizing Methanospirillum hungateii, and is able to oxidize propionate and other organic compounds in pure culture with sulfate or fumarate as the electron acceptor. Additionally, it ferments fumarate. It is a non-motile, non-spore-forming, Gram- bacteria. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassSyntrophobacteria
OrderSyntrophobacterales
FamilySyntrophobacteraceae
GenusSyntrophobacter
SpeciesSyntrophobacter fumaroxidans
StrainMPOB

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Syntrophobacter fumaroxidans MPOB
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementSingles - Pairs
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Syntrophobacter fumaroxidans MPOB

NC_008554.1

Gene Summary

Adenine Count

1005043 bp

Thymine Count

993616 bp

Guanine Count

1497104 bp

Cytosine Count

1494488 bp

Genome Length

4990251 bp

Protein-coding Genes

3955 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
2_nc_021793: structural proteinSFUM_RS21695Not Available+2290794 - 229119515039.7
hypothetical proteinSFUM_RS09680Not Available+2291280 - 229164213992.0
hypothetical proteinSFUM_RS09685Not Available+2291639 - 22918819352.45
hypothetical proteinSFUM_RS09690Not Available+2291951 - 229254722047.4
Portal proteinSFUM_RS09695Not Available+2292552 - 229409357578.1
Portal proteinSFUM_RS09700Not Available+2294150 - 229589864167.7
Minor capsid proteinSFUM_RS21700Not Available+2295895 - 229727152419.2
Virion morphogenesis proteinSFUM_RS21705Not Available+2297372 - 229787818180.2
Putative proteaseSFUM_RS09715Not Available+2297931 - 229901039148.3
Hypothetical proteinSFUM_RS09720Not Available+2299022 - 229941713434.9

Displaying genes 1 – 10 of 4055 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

61 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0014039L-Lactic acidC3H6O3Chemical structure of L-Lactic acid79-33-4
Average90.0779Da
Monoisotopic90.031694058Da
BASm0014062Valeric acidC5H10O2Chemical structure of Valeric acid109-52-4
Average102.1317Da
Monoisotopic102.068079564Da
BASm0017265Uridine diphosphate-N-acetylglucosamineC17H27N3O17P2Chemical structure of Uridine diphosphate-N-acetylglucosamine528-04-1
Average607.3537Da
Monoisotopic607.081569477Da
BASm0017271NADC21H28N7O14P2Chemical structure of NAD53-84-9
Average664.433Da
Monoisotopic664.116946663Da
BASm0017277Adenosine phosphosulfateC10H14N5O10PSChemical structure of Adenosine phosphosulfate485-84-7
Average427.284Da
Monoisotopic427.019898895Da
BASm0017287CarbamoylphosphateCH4NO5PChemical structure of Carbamoylphosphate590-55-6
Average141.0199Da
Monoisotopic140.982708755Da
BASm0017311Adenylsuccinic acidC14H18N5O11PChemical structure of Adenylsuccinic acid19046-78-7
Average463.2934Da
Monoisotopic463.074042955Da
BASm0017328AICARC9H15N4O8PChemical structure of AICAR3031-94-5
Average338.2112Da
Monoisotopic338.062749988Da
BASm0017347N1-(5-Phospho-a-D-ribosyl)-5,6-dimethylbenzimidazoleC14H19N2O7PChemical structure of N1-(5-Phospho-a-D-ribosyl)-5,6-dimethylbenzimidazoleNULL
Average358.2836Da
Monoisotopic358.092987484Da
BASm0017364(R)-2,3-Dihydroxy-isovalerateC5H10O4Chemical structure of (R)-2,3-Dihydroxy-isovalerateNULL
Average134.1305Da
Monoisotopic134.057908808Da

Displaying 41–50 of 61 metabolites