Synechococcus sp. JA-3-3Ab str. A-Prime

Gram-negativeRodMotileFacultative

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Synechococcales

Family

Synechococcaceae

Genus

Synechococcus

Description

Synechococcus sp. JA-3-3Ab str. A-Prime is a Gram-negative, rod-shaped cyanobacterium that typically exists as single cells. This organism is a photoautotroph, utilizing light as its primary energy source to drive photosynthesis, enabling it to thrive in specialized habitats. As a facultative organism, it exhibits flexibility in its oxygen requirements, allowing it to adapt to varying environmental conditions where oxygen levels may fluctuate. The ability of Synechococcus sp. JA-3-3Ab str. A-Prime to engage in photosynthesis positions it as a critical player in the carbon cycle within its ecological niche, potentially influencing local microbial communities and contributing to primary production. Its specialized habitat suggests adaptations that may allow it to occupy unique ecological roles, possibly in environments where other photosynthetic organisms might not be as competitive. This adaptability highlights the significance of Synechococcus sp. JA-3-3Ab str. A-Prime in understanding microbial dynamics and energy flow within specific ecosystems.

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderSynechococcales
FamilySynechococcaceae
GenusSynechococcus
SpeciesSynechococcus sp. JA-3-3Ab
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Synechococcus sp. JA-3-3Ab str. A-Prime
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeThermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourcePhotosynthetic - Photoautotroph
PathogenicityNot Available

Genome Summary

Synechococcus sp. JA-3-3Ab str. A-Prime

Accession NumberNC_007775.1

Gene Summary

Adenine Count

583006 bp

Thymine Count

583140 bp

Guanine Count

884334 bp

Cytosine Count

882286 bp

Genome Length

2932766 bp

Protein-coding Genes

2778 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
dihydropteroate synthaseCYA_RS00105Not Available-20577 - 2144630271.6
redox-regulated atpase ychfCYA_RS00110Not Available-22084 - 2317539023.0
23s rrna (uracil(1939)-c(5))-methyltransferase rlmdCYA_RS00115Not Available-23329 - 2472352039.1
o-antigen ligase family proteinCYA_RS00120Not Available-24911 - 2620946808.7
2fe-2s iron-sulfur cluster-binding proteinCYA_RS00125Not Available-26202 - 2656713785.2
phosphomannose isomerase type ii c-terminal cupin domainCYA_RS00130Not Available+26693 - 2714516827.0
m48 family metalloproteaseCYA_RS00135Not Available-27153 - 2953487716.5
fur family transcriptional regulatorCYA_RS00140Not Available-29715 - 3016117102.8
hypothetical proteinCYA_RS00145Not Available+30488 - 3086814016.1
d-alanyl-d-alanine carboxypeptidaseCYA_RS00150Not Available+30915 - 3218945591.9

Displaying genes 21 – 30 of 2835 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

61 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0002305(S)-2-ethyl-2-hydroxy-3-oxobutanoateC6H9O4Chemical structure of (S)-2-ethyl-2-hydroxy-3-oxobutanoateNot available
Average145.135Da
Monoisotopic145.0506324Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da

Displaying 1–10 of 61 metabolites