Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia marina
Accession NumberCYPW00000000.1
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| carbon monoxide dehydrogenase medium chain | SHM7688_00022 | P19920 | - | 23328 - 24116 | 26883.8 |
| carbon monoxide dehydrogenase large chain | SHM7688_00023 | P19913 | - | 24130 - 26493 | 84168.1 |
| carbon monoxide dehydrogenase small chain | SHM7688_00024 | P19921 | - | 26592 - 27077 | 16795.0 |
| putative molybdopterin biosynthesis protein moea/lysr substrate binding-domain-containing protein | SHM7688_00025 | Not Available | - | 27213 - 28199 | 34071.4 |
| putative xanthine dehydrogenase subunit a | SHM7688_00026 | P77183 | - | 28196 - 29164 | 33596.6 |
| vwa domain containing coxe-like protein | SHM7688_00027 | Not Available | - | 29258 - 30511 | 46668.2 |
| gas vesicle protein gvpn | SHM7688_00028 | Not Available | - | 30572 - 31480 | 33353.1 |
| hypothetical protein | SHM7688_00029 | Not Available | + | 31685 - 32629 | 35503.4 |
| dihydroorotase | SHM7688_00030 | Q1GFQ7 | + | 32702 - 33745 | 37745.9 |
| orotate phosphoribosyltransferase | SHM7688_00031 | Q1GFQ6 | + | 33773 - 34453 | 24963.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.