Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia marina
Accession NumberCYPW00000000.1
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| type iii pantothenate kinase | SHM7688_00072 | Q28T47 | - | 75632 - 76408 | 27712.9 |
| bifunctional protein bira | SHM7688_00073 | P29906 | - | 76435 - 77271 | 29393.7 |
| nadh-quinone oxidoreductase subunit n | SHM7688_00074 | Q28T49 | - | 77308 - 78753 | 51128.7 |
| nadh-quinone oxidoreductase subunit m | SHM7688_00075 | P50974 | - | 78768 - 80312 | 56623.8 |
| nadh-quinone oxidoreductase subunit l | SHM7688_00076 | P29924 | - | 80312 - 82462 | 79455.6 |
| nadh-quinone oxidoreductase subunit k | SHM7688_00077 | Q5LPT3 | - | 82469 - 82774 | 10856.8 |
| nadh-quinone oxidoreductase subunit j | SHM7688_00078 | P29922 | - | 82813 - 83421 | 22261.3 |
| 4-carboxymuconolactone decarboxylase | SHM7688_00079 | P29912 | - | 83418 - 83825 | 14924.1 |
| nadh-quinone oxidoreductase subunit i | SHM7688_00080 | Q5LPS9 | - | 83850 - 84344 | 18827.5 |
| nadh-quinone oxidoreductase subunit h | SHM7688_00081 | Q163R6 | - | 84346 - 85386 | 38507.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.