Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia marina
Accession NumberCYPW00000000.1
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| fatty acyl-coa reductase | SHM7688_00052 | Q6F7B8 | + | 55743 - 56417 | 23803.2 |
| 5'-nucleotidase sure | SHM7688_00053 | Q5LQ08 | + | 56558 - 57340 | 27310.2 |
| protein-l-isoaspartate o-methyltransferase | SHM7688_00054 | Q5LQ09 | + | 57337 - 57993 | 23784.8 |
| hypothetical protein | SHM7688_00055 | Not Available | - | 57927 - 58088 | 5858.16 |
| murein hydrolase activator nlpd precursor | SHM7688_00056 | Not Available | + | 58168 - 59373 | 41283.5 |
| putative atpase (aaa+ superfamily) | SHM7688_00057 | Not Available | - | 59628 - 60470 | 31012.9 |
| sec-independent protein translocase protein tatc | SHM7688_00058 | D5AT98 | - | 60588 - 61523 | 33959.7 |
| sec-independent protein translocase protein tatb | SHM7688_00059 | Q5LQ14 | - | 61520 - 61987 | 16516.7 |
| twin arginine translocase protein a | SHM7688_00060 | Q2ND30 | - | 62005 - 62223 | 7497.19 |
| bifunctional biotin--[acetyl-coa-carboxylase] synthetase/biotin operon repressor | SHM7688_00061 | Not Available | + | 62409 - 63080 | 24436.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.