Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia marina
Accession NumberCYPW00000000.1
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_00042 | Not Available | + | 46217 - 46657 | 16913.9 |
| hypothetical protein | SHM7688_00043 | Not Available | - | 47042 - 48337 | 47110.9 |
| inner membrane protein yebs | SHM7688_00044 | Not Available | + | 48508 - 49002 | 17891.1 |
| dna repair protein rada | SHM7688_00045 | Q2YMH5 | + | 49002 - 50387 | 48132.9 |
| colicin v production protein | SHM7688_00046 | Not Available | + | 50462 - 51016 | 19716.2 |
| trap transporter solute receptor, taxi family | SHM7688_00047 | Not Available | + | 51155 - 52417 | 46200.4 |
| transglycosylase associated protein | SHM7688_00048 | Not Available | + | 52447 - 52728 | 9295.89 |
| amidophosphoribosyltransferase | SHM7688_00049 | Q9L6B8 | + | 53070 - 54599 | 55533.2 |
| hypothetical protein | SHM7688_00050 | Not Available | + | 54607 - 55176 | 20665.2 |
| hypothetical protein | SHM7688_00051 | Not Available | + | 55314 - 55571 | 8833.82 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.