Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia marina
Accession NumberCYPW00000000.1
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| replicative dna helicase | SHM7688_00032 | Q92HG8 | + | 34645 - 36135 | 54306.8 |
| alanine racemase, biosynthetic | SHM7688_00033 | Q163V1 | + | 36344 - 37381 | 36922.3 |
| putative phospholipid abc transporter permease protein mlae | SHM7688_00034 | Q4UNC7 | + | 37378 - 38163 | 27143.7 |
| glutamine transport atp-binding protein glnq | SHM7688_00035 | P63358 | + | 38160 - 38906 | 26598.4 |
| hypothetical protein | SHM7688_00036 | Not Available | + | 38903 - 39295 | 14333.2 |
| hemolysin, chromosomal | SHM7688_00037 | Not Available | + | 39421 - 41835 | 82868.5 |
| type i secretion system atp-binding protein prsd | SHM7688_00038 | Not Available | + | 41844 - 43922 | 73860.1 |
| type i secretion system membrane fusion protein prse | SHM7688_00039 | Not Available | + | 43964 - 45256 | 46660.0 |
| hypothetical protein | SHM7688_00040 | Not Available | + | 45267 - 45377 | 3998.8 |
| putative nucleotidyltransferases | SHM7688_00041 | Not Available | + | 45687 - 46214 | 19217.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.