Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia marina
Accession NumberCYPW00000000.1
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| leucine-responsive regulatory protein | SHM7688_00012 | F8DT92 | - | 15846 - 16307 | 17413.1 |
| hypothetical protein | SHM7688_00013 | Not Available | + | 16450 - 16773 | 11916.8 |
| sulfite reductase | SHM7688_00014 | Q73XV0 | + | 16811 - 18478 | 62158.9 |
| phosphoadenosine phosphosulfate reductase | SHM7688_00015 | Q98GP9 | + | 18468 - 19265 | 29215.8 |
| hypothetical protein | SHM7688_00016 | Not Available | + | 19262 - 19669 | 15130.5 |
| ferredoxin--nadp reductase | SHM7688_00017 | Q9L6V3 | + | 19755 - 20636 | 33277.7 |
| hypothetical protein | SHM7688_00018 | Not Available | - | 20724 - 21410 | 22635.6 |
| translation initiation factor if-3 | SHM7688_00019 | Q5LQ58 | + | 21741 - 22151 | 15840.5 |
| hypothetical protein | SHM7688_00020 | Not Available | + | 22189 - 22827 | 23124.0 |
| hypothetical protein | SHM7688_00021 | Not Available | - | 22859 - 23257 | 14874.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.