Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia marina
Accession NumberCYPW00000000.1
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SHM7688_00003 | Not Available | - | 3067 - 3333 | 9784.8 |
| autoinducer 2 sensor kinase/phosphatase luxq | SHM7688_00004 | Not Available | + | 3438 - 5885 | 89412.7 |
| 16s ribosomal rna | Not Available | Not Available | + | 4285 - 5755 | Not Available |
| putative hydrolase yxep | SHM7688_00005 | Q851L5 | - | 5940 - 7106 | 41769.5 |
| putative hydrolase yxep | SHM7688_00006 | Not Available | - | 7134 - 8297 | 41524.5 |
| putative hydrolase yxep | SHM7688_00007 | Not Available | - | 8325 - 9500 | 42125.7 |
| c4-dicarboxylate transport sensor protein dctb | SHM7688_00008 | Not Available | + | 9677 - 11446 | 64542.2 |
| c4-dicarboxylate transport transcriptional regulatory protein dctd | SHM7688_00009 | Q9HU19 | + | 11443 - 12669 | 44067.2 |
| inner membrane protein ybjj | SHM7688_00010 | P55682 | + | 12666 - 13829 | 39815.5 |
| ribose and galactose chemoreceptor protein | SHM7688_00011 | Q00986 | - | 13898 - 15676 | 63060.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.