Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia marina
Accession NumberCYPW00000000.1
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ribose and galactose chemoreceptor protein | SHM7688_03889 | P02942 | + | 3966402 - 3968156 | 62559.9 |
| beta-glucanase precursor | SHM7688_03890 | P23904 | - | 3968442 - 3969263 | 30656.1 |
| putative outer membrane lipoprotein | SHM7688_03891 | Not Available | - | 3969548 - 3970090 | 19039.9 |
| acyltransferase family protein | SHM7688_03892 | Not Available | + | 3970240 - 3971379 | 42124.4 |
| glucose-1-phosphate adenylyltransferase | SHM7688_03893 | P74285 | + | 3971393 - 3972895 | 53784.1 |
| hypothetical protein | SHM7688_03894 | Not Available | + | 3972892 - 3973737 | 30540.7 |
| cellulose synthase catalytic subunit | SHM7688_03895 | Not Available | + | 3973788 - 3975659 | 68679.1 |
| hypothetical protein | SHM7688_03896 | Not Available | + | 3975637 - 3976965 | 48419.6 |
| type i secretion membrane fusion protein, hlyd family | SHM7688_03897 | Not Available | - | 3977110 - 3978318 | 45089.7 |
| type i secretion system atp-binding protein prsd | SHM7688_03898 | Not Available | - | 3978299 - 3980335 | 73199.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.