Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia marina |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia marina
Accession NumberCYPW00000000.1
Gene Summary
Adenine Count
837910 bp
Thymine Count
866653 bp
Guanine Count
1182103 bp
Cytosine Count
1111295 bp
Genome Length
4001860 bp
Protein-coding Genes
3862 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| giy-yig nuclease superfamily protein | SHM7688_03869 | Not Available | + | 3952467 - 3952751 | 11144.4 |
| d-hydantoinase/dihydropyrimidinase | SHM7688_03870 | Q9I676 | + | 3952810 - 3954267 | 53094.0 |
| putative mannose-6-phosphate isomerase | SHM7688_03871 | Not Available | - | 3954273 - 3954686 | 14871.9 |
| taurine import atp-binding protein taub | SHM7688_03872 | Q57855 | + | 3954719 - 3955522 | 29644.5 |
| putative n-acetyltransferase yjab | SHM7688_03873 | Not Available | + | 3955616 - 3956047 | 16466.6 |
| putative aliphatic sulfonates transport permease protein ssuc | SHM7688_03874 | A9WGD1 | + | 3956044 - 3956976 | 33031.5 |
| putative aliphatic sulfonates transport permease protein ssuc | SHM7688_03875 | Not Available | + | 3956991 - 3957818 | 29931.4 |
| putative thiamine biosynthesis protein | SHM7688_03876 | Q9K9G5 | + | 3957857 - 3958846 | 35207.4 |
| thioredoxin-2 | SHM7688_03877 | P0AGG6 | + | 3958967 - 3959398 | 15490.9 |
| putative acyl-coa thioester hydrolase | SHM7688_03878 | P0A1A2 | + | 3959511 - 3959918 | 14673.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.